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As of 4-Dec-2019 number of released structures: 10490
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NDB ID: 5B2J  PDB ID: 5B2J 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
112II_5CM-61DG-60:5CM60DG61_JJ0.407-0.2223.1258.47218.49226.363-3.3730.6552.47634.721-15.90833.188
164II_5CM-5DG-4:5CM4DG5_JJ-0.0741.8093.7670.178-3.2139.4743.0950.1333.614-4.743-0.26239.6
174II_5CM5DG6:5CM-6DG-5_JJ0.1042.4474.1242.419-3.58742.4833.8050.1563.914-4.935-3.32842.692
1129II_5CM61DG62:5CM-62DG-61_JJ-0.444-0.5553.32-6.94615.87424.932-4.24-0.5412.55732.26414.11830.283
11II_DA-72DT-71:DA71DT72_JJ-0.999-1.0232.7463.7579.93124.542-4.1792.9062.01422.089-8.35626.708
14II_DA-69DA-68:DT68DT69_JJ-0.2870.4233.147-3.7562.92538.8410.291-0.0093.1824.3795.62239.12
15II_DA-68DT-67:DA67DT68_JJ0.242-0.5643.141.827-3.78928.713-0.312-0.0913.195-7.589-3.65929.014
17II_DA-66DT-65:DA65DT66_JJ-0.088-1.1473.4714.67-0.72434.949-1.780.8813.453-1.198-7.73135.257
111II_DA-625CM-61:DG61DT62_JJ1.2-0.9523.5370.553-3.25137.518-1.012-1.7813.621-5.042-0.85837.657
118II_DA-55DG-54:DC54DT55_JJ0.6020.6643.3772.38410.68327.84-1.107-0.6343.43221.195-4.7329.875
121II_DA-51DT-50:DA50DT51_JJ-0.0740.3522.9752.194-3.00832.4691.0960.4742.92-5.357-3.90832.676
124II_DA-45DA-44:DT44DT45_JJ-0.036-0.0893.135-3.7616.05636.798-0.899-0.4163.0729.4845.88937.458
125II_DA-44DA-43:DT43DT44_JJ0.344-0.4553.335-3.318-12.5538.0240.827-0.8953.279-18.6124.92140.101
126II_DA-43DG-42:DC42DT43_JJ0.58-0.8433.6083.5063.85928.608-2.609-0.3133.5117.728-7.02129.069
131II_DA-38DT-37:DA37DT38_JJ0.193-1.4813.159-6.574-0.43929.265-2.775-1.6783.065-0.85512.80729.981
137II_DA-32DA-31:DT31DT32_JJ1.5260.5493.2530.56813.42729.512-1.476-2.6333.22224.802-1.04932.366
138II_DA-31DA-30:DT30DT31_JJ-0.2581.4513.741-3.1047.72241.4191.073-0.0213.94610.7874.33742.211
139II_DA-30DC-29:DG29DT30_JJ0.87-0.4462.974-1.75217.94728.241-3.359-1.7662.24532.8843.2133.408
145II_DA-24DA-23:DT23DT24_JJ-0.9130.132.895-6.791-0.72838.2750.2760.6213.005-1.09910.25738.858
146II_DA-23DC-22:DG22DT23_JJ0.573-0.5993.1689.064-3.43537.306-0.4830.2543.255-5.261-13.88538.501
150II_DA-19DA-18:DT18DT19_JJ-0.5670.4043.12-3.4977.86833.329-0.5180.4253.17213.4415.97434.393
151II_DA-18DA-17:DT17DT18_JJ-0.347-0.1694.016-10.4170.17939.638-0.266-0.9223.9780.25915.04840.931
152II_DA-17DA-16:DT16DT17_JJ-0.7610.1073.553-0.596-5.27339.3680.8241.0443.521-7.7840.8839.71
153II_DA-16DG-15:DC15DT16_JJ0.0921.0073.3530.5730.5735.5581.563-0.0643.370.934-0.93835.567
157II_DA-12DT-11:DA11DT12_JJ-1.4170.8733.256-18.442-1.43243.5741.2180.1373.523-1.83323.61847.161
163II_DA-65CM-5:DG5DT6_JJ1.00.6923.0251.926-0.12133.751.209-1.4293.073-0.209-3.31433.804
168II_DA-1DA0:DT0DT1_JJ0.085-0.3083.596-1.04712.47636.036-2.193-0.2743.30919.4581.63338.08
169II_DA0DT1:DA-1DT0_JJ-0.044-0.5553.149-1.4086.19729.851-2.222-0.1812.97511.8612.69430.504
173II_DA45CM5:DG-5DT-4_JJ1.1680.5213.32411.639-10.08734.7792.162-0.2263.27-15.943-18.39737.94
178II_DA9DA10:DT-10DT-9_JJ0.2840.063.432.0369.86335.857-1.291-0.1593.34115.644-3.2337.2
179II_DA10DC11:DG-11DT-10_JJ0.29-0.4923.296-1.2536.71927.935-2.483-0.8633.0813.662.54728.743
181II_DA12DT13:DA-13DT-12_JJ0.166-0.7083.357-0.7553.77827.734-2.369-0.5243.2287.8341.56527.995
191II_DA22DG23:DC-23DT-22_JJ-0.301-0.243.137-0.6448.05833.042-1.6370.4173.00313.911.11133.99
195II_DA26DG27:DC-27DT-26_JJ1.8230.3222.902-1.81-15.74231.652.522-3.2362.379-26.863.08735.304
198II_DA29DG30:DC-30DT-29_JJ-0.4260.4413.077-7.9715.1935.0680.006-0.3923.1288.42312.93636.296
1105II_DA36DA37:DT-37DT-36_JJ0.516-0.4962.791-4.217-6.67935.050.017-1.3552.758-10.926.89535.902
1106II_DA37DA38:DT-38DT-37_JJ0.262-0.5683.8240.499-12.33136.1761.002-0.3253.813-19.184-0.77638.156
1107II_DA38DT39:DA-39DT-38_JJ-0.208-0.8363.02710.060.00232.183-1.4431.8632.8350.004-17.61733.679
1109II_DA40DC41:DG-41DT-40_JJ-0.7450.0023.463-3.281-6.4731.4131.2380.7163.452-11.7545.9632.219
1111II_DA42DC43:DG-43DT-42_JJ0.912-0.3073.4722.458-1.52936.506-0.264-1.0893.533-2.436-3.91736.617
1120II_DA51DT52:DA-52DT-51_JJ-0.4010.593.0832.63-6.25839.0931.5470.8762.926-9.267-3.89539.655
1122II_DA54DC55:DG-55DT-54_JJ1.0570.2213.318-3.756-1.84836.6540.598-2.1773.184-2.9275.94936.884
1128II_DA605CM61:DG-61DT-60_JJ0.080.3553.0150.083-2.85143.9240.72-0.12.988-3.807-0.11144.012
1134II_DA66DT67:DA-67DT-66_JJ-0.047-0.9113.105-0.857-2.92430.517-1.169-0.0733.176-5.5391.62430.665
1136II_DA68DT69:DA-69DT-68_JJ-0.241-0.8613.331-0.712-4.02428.588-0.7990.3183.422-8.0971.43328.872
1140II_DA72DT73:DA-73DT-72_JJ1.34-0.5643.3652.7195.14642.791-1.288-1.5463.3547.014-3.70543.167
13II_DC-70DA-69:DT69DG70_JJ-0.5250.7463.266-1.0229.57628.289-0.6230.7983.35118.9122.01829.852
19II_DC-64DC-63:DG63DG64_JJ0.29-0.293.0344.6197.77727.897-2.1260.352.86115.62-9.27829.299
110II_DC-63DA-62:DT62DG63_JJ-1.2220.6353.172-5.9213.47338.0880.5281.1133.365.278.98438.679
116II_DC-57DC-56:DG56DG57_JJ0.691.4273.3982.122-2.95131.73.146-0.8593.293-5.38-3.86831.902
117II_DC-56DA-55:DT55DG56_JJ-0.232.9853.5370.163-11.87352.1294.0660.2672.842-13.314-0.18353.372
123II_DC-48DC-47:DG47DG48_JJ0.5330.2022.35613.3453.36926.315-0.1491.1132.3556.838-27.08229.641
140II_DC-29DT-28:DA28DG29_JJ0.5120.0963.1078.7040.45328.8690.0940.7463.1270.883-16.97730.129
142II_DC-27DC-26:DG26DG27_JJ1.5151.0994.3-10.29610.71935.504-0.076-3.9813.89116.70416.04438.396
143II_DC-26DT-25:DA25DG26_JJ-1.8620.5072.9017.559-6.86933.4011.6924.0372.292-11.617-12.78634.885
147II_DC-22DT-21:DA21DG22_JJ0.128-0.2063.181-6.3653.0935.186-0.762-1.093.0835.04910.39935.868
156II_DC-13DA-12:DT12DG13_JJ0.2360.9583.62411.48616.18127.399-1.5261.8483.48929.721-21.09733.718
162II_DC-7DA-6:DT6DG7_JJ-0.8032.1824.0720.917-3.01946.3873.0751.1113.915-3.827-1.16246.488
172II_DC3DA4:DT-4DG-3_JJ-0.8451.7143.28-5.061-3.18742.9122.6320.6533.226-4.3316.87743.307
180II_DC11DA12:DT-12DG-11_JJ-0.5250.8123.287-0.2884.75637.6710.6290.7693.3657.3290.44437.96
184II_DC15DC16:DG-16DG-15_JJ0.2871.6024.109-2.63-6.81743.8172.89-0.6773.809-9.0593.49544.392
185II_DC16DT17:DA-17DG-16_JJ-0.8380.9713.327-0.848-11.88533.4843.2871.2542.849-19.8631.41735.483
190II_DC21DA22:DT-22DG-21_JJ-0.053-0.3143.697-1.1516.72524.073-4.636-0.1712.87735.1622.41829.264
1103II_DC34DC35:DG-35DG-34_JJ-1.461.1773.346-5.43-0.75535.222.0391.5553.5-1.2398.90735.631
1104II_DC35DA36:DT-36DG-35_JJ-0.062.13.562.568-17.73346.3993.7920.2582.633-21.586-3.12649.559
1110II_DC41DA42:DT-42DG-41_JJ0.0930.2053.292-2.7447.8639.12-0.615-0.4553.25811.5794.04339.962
1112II_DC43DT44:DA-44DG-43_JJ-0.527-0.7183.4533.2767.20128.23-3.0081.7653.114.409-6.55529.295
1123II_DC55DT56:DA-56DG-55_JJ-0.2140.2822.9943.3286.41524.493-1.0511.362.91814.716-7.63425.522
1127II_DC59DA60:DT-60DG-59_JJ-0.4831.1823.4890.1856.48534.7310.8930.8263.64110.748-0.30735.313
113II_DG-60DT-59:DA595CM60_JJ0.2550.663.59.409-5.45141.8781.4670.6393.371-7.476-12.90443.205
115II_DG-58DC-57:DG57DC58_JJ-0.0050.3022.8551.6380.44938.0990.4120.1892.8550.688-2.50838.135
119II_DG-54DT-53:DA53DC54_JJ-0.628-0.0113.201-9.467-2.87833.2630.426-0.4113.243-4.89416.09934.664
127II_DG-42DT-41:DA41DC42_JJ-0.65-0.3713.396-1.423-3.11938.131-0.1560.8053.436-4.7632.17338.279
129II_DG-40DT-39:DA39DC40_JJ-0.1380.2263.111.912-3.53537.5770.780.4463.066-5.469-2.95737.783
135II_DG-34DG-33:DC33DC34_JJ1.7971.6442.713-1.853-4.53935.853.15-3.0992.401-7.3322.99436.173
136II_DG-33DA-32:DT32DC33_JJ-1.8431.3593.0675.9032.60827.2482.2545.0672.735.44-12.31327.988
149II_DG-20DA-19:DT19DC20_JJ-0.1570.653.7888.1237.32644.5980.091.0273.7629.485-10.51745.853
154II_DG-15DG-14:DC14DC15_JJ0.3171.4863.804-20.836-48.19234.4913.645-1.260.966-54.14523.40962.139
155II_DG-14DC-13:DG13DC14_JJ-0.472-0.5264.2610.5246.0239.451-1.5772.1213.8978.673-15.16141.201
159II_DG-10DT-9:DA9DC10_JJ-0.641-0.4073.588-7.9437.71626.166-2.806-0.7263.38116.15316.62928.375
165II_DG-4DT-3:DA35CM4_JJ-0.30.533.198-5.350.4631.8530.873-0.3963.2120.839.66232.29
167II_DG-2DA-1:DT1DC2_JJ-0.0660.0922.977-2.212-0.19734.3350.183-0.2032.975-0.3343.74134.404
175II_DG6DT7:DA-75CM-6_JJ0.190.6933.034-2.9592.07335.5420.851-0.7093.0433.3854.83235.719
177II_DG8DA9:DT-9DC-8_JJ-0.5770.1493.3420.7654.47232.422-0.5251.1593.3187.96-1.36232.73
183II_DG14DC15:DG-15DC-14_JJ-1.1340.5743.9050.395-11.86737.7812.4791.7313.561-17.797-0.59239.537
192II_DG23DT24:DA-24DC-23_JJ-0.379-0.963.293-6.2990.91530.405-1.972-0.523.2731.72211.84831.049
196II_DG27DG28:DC-28DC-27_JJ-0.578-0.1753.6093.4611.22936.407-0.4641.4413.5331.961-5.52136.586
197II_DG28DA29:DT-29DC-28_JJ0.903-0.0843.82710.285.34337.369-0.9030.1443.8858.104-15.59239.062
199II_DG30DT31:DA-31DC-30_JJ-1.076-0.9653.038-6.0429.52924.318-4.3440.8892.66521.21913.45426.772
1117II_DG48DG49:DC-49DC-48_JJ-1.6040.6812.58-15.8176.43230.7890.2350.4593.09811.10827.31535.106
1118II_DG49DT50:DA-50DC-49_JJ0.6080.0752.7233.3214.55231.254-0.569-0.5972.7548.365-6.10131.746
1125II_DG57DG58:DC-58DC-57_JJ-0.6311.5724.1331.842-4.54637.2923.1671.2743.887-7.071-2.86637.602
1126II_DG58DC59:DG-59DC-58_JJ0.6640.1432.976-5.3344.6231.317-0.486-2.0612.8198.4259.72632.083
1130II_DG62DT63:DA-635CM-62_JJ-0.188-0.8553.572-1.393-1.83936.576-1.0820.093.613-2.9262.21736.646
1132II_DG64DG65:DC-65DC-64_JJ1.2470.6413.2732.3927.0237.9190.078-1.5823.40310.679-3.63838.611
1133II_DG65DA66:DT-66DC-65_JJ-1.4430.0363.13-6.9853.36332.738-0.4891.3493.3455.86512.18133.619
1139II_DG71DA72:DT-72DC-71_JJ-0.768-0.5743.4470.682-2.12238.645-0.591.2473.459-3.204-1.02938.707
12II_DT-71DC-70:DG70DA71_JJ1.3560.4763.1275.010.24443.3540.618-1.3543.2590.329-6.75543.629
16II_DT-67DA-66:DT66DA67_JJ0.037-0.0453.395-1.97-3.32643.8330.265-0.2423.385-4.4452.63343.995
18II_DT-65DC-64:DG64DA65_JJ0.5830.1033.405-2.341-3.27932.7520.756-1.4363.331-5.7874.13232.992
114II_DT-59DG-58:DC58DA59_JJ-0.5030.8733.404-2.93619.05725.585-2.3720.3053.29737.0575.70831.94
120II_DT-53DA-51:DT51DA53_JJ-0.638-0.5516.293-0.56119.98871.313-1.680.4975.99116.820.47273.704
122II_DT-50DC-48:DG48DA50_JJ0.271-0.4336.2562.47419.46356.472-2.308-0.0355.84319.915-2.53259.517
128II_DT-41DG-40:DC40DA41_JJ0.441-0.3183.3693.36515.37731.288-2.902-0.2162.93126.514-5.80234.936
130II_DT-39DA-38:DT38DA39_JJ0.112-0.2963.463-0.20811.04935.425-2.018-0.2063.2317.6360.33337.056
132II_DT-37DT-36:DA36DA37_JJ0.314-0.3933.6075.228-17.35837.0311.5950.2023.463-25.54-7.69341.09
133II_DT-36DT-35:DA35DA36_JJ0.013-0.723.4213.4764.18833.622-1.9190.553.2947.182-5.96134.047
134II_DT-35DG-34:DC34DA35_JJ-0.9672.13.5884.613-12.85245.93.6191.5622.832-16.065-5.76647.783
141II_DT-28DC-27:DG27DA28_JJ0.061.1232.77811.8690.87546.3321.3280.7372.7331.091-14.79947.755
144II_DT-25DA-24:DT24DA25_JJ1.8211.5972.9944.971-15.08240.8583.397-2.0332.478-20.686-6.81843.712
148II_DT-21DG-20:DC20DA21_JJ0.556-0.534.1912.6529.42529.779-3.236-0.3963.8817.746-4.99331.313
158II_DT-11DG-10:DC10DA11_JJ0.2581.0753.8860.05412.64133.962-0.494-0.4074.0220.769-0.08836.174
160II_DT-9DT-8:DA8DA9_JJ-0.1530.0372.9254.207-0.29833.4520.1080.8732.884-0.515-7.27333.709
161II_DT-8DC-7:DG7DA8_JJ0.9040.6642.7617.8845.17736.2660.431-0.4892.9518.148-12.4137.433
166II_DT-3DG-2:DC2DA3_JJ0.3020.9323.5241.7396.2236.5320.547-0.2183.6389.827-2.74837.08
170II_DT1DT2:DA-2DA-1_JJ-0.189-0.4183.1913.578.15830.713-2.1750.9632.94615.011-6.56931.948
171II_DT2DC3:DG-3DA-2_JJ-0.0390.313.364-0.3633.32333.292-0.0280.0063.3785.7820.63133.455
176II_DT7DG8:DC-8DA-7_JJ0.0260.9183.207-2.8753.95238.3330.904-0.3913.2725.9894.35738.631
182II_DT13DG14:DC-14DA-13_JJ0.8840.2863.116-0.3852.19236.9150.17-1.4433.1183.4580.60736.98
186II_DT17DT18:DA-18DA-17_JJ0.310.4173.132-0.0471.79639.9430.412-0.4593.1472.6280.06839.982
187II_DT18DT19:DA-19DA-18_JJ0.6970.2273.3412.3299.45529.643-1.454-0.8343.317.883-4.40531.167
188II_DT19DT20:DA-20DA-19_JJ-0.4220.3133.318-1.20616.99524.783-3.0810.5532.94234.8272.47229.999
189II_DT20DC21:DG-21DA-20_JJ0.7060.3013.2634.4860.82137.7760.356-0.5073.3281.262-6.89838.04
193II_DT24DT25:DA-25DA-24_JJ0.8060.5313.0427.934-5.09637.7271.386-0.2973.049-7.734-12.04138.846
194II_DT25DA26:DT-26DA-25_JJ-1.5131.3273.332-3.808-11.8543.7242.7581.6283.008-15.544.99345.377
1100II_DT31DT32:DA-32DA-31_JJ0.4630.093.3861.1171.0636.268-0.009-0.5813.41.703-1.79336.3
1101II_DT32DT33:DA-33DA-32_JJ-0.58-0.0783.4324.546.32936.198-1.0061.5473.27810.043-7.20436.999
1102II_DT33DC34:DG-34DA-33_JJ1.8810.9493.3282.3471.56934.5221.342-2.7833.4832.639-3.94734.634
1108II_DT39DA40:DT-40DA-39_JJ0.039-0.5743.269-4.12320.86730.533-3.578-0.592.38834.8216.8837.066
1113II_DT44DT45:DA-45DA-44_JJ-0.288-0.043.736-7.87-4.06140.7440.438-0.5533.714-5.75111.14541.655
1114II_DT45DT46:DA-46DA-45_JJ-0.164-0.282.7096.433-1.6133.405-0.2671.1282.643-2.767-11.05534.038
1115II_DT46DT47:DA-47DA-46_JJ-0.9241.4313.595-1.781-12.70243.7763.0211.033.119-16.6152.3345.528
1116II_DT47DG48:DC-48DA-47_JJ0.6652.3493.3657.6847.21836.7142.5740.0693.80211.179-11.90138.148
1119II_DT50DA51:DT-51DA-50_JJ0.228-0.123.29-10.92521.49324.127-3.622-2.1272.20640.66720.67233.982
1121II_DT52DA54:DT-54DA-52_JJ0.316-1.2726.5886.28923.1359.548-3.1940.2425.80222.335-6.07363.778
1124II_DT56DG57:DC-57DA-56_JJ-0.5422.7283.395-2.825-13.63450.1523.9760.4412.644-15.7383.2651.928
1131II_DT63DG64:DC-64DA-63_JJ-0.5220.2873.2324.9912.04325.737-2.1072.1612.92325.089-10.39728.8
1135II_DT67DA68:DT-68DA-67_JJ-0.26-0.0163.629-3.368-3.99743.4570.403-0.0083.626-5.3754.52943.755
1137II_DT69DT70:DA-70DA-69_JJ0.9410.2163.2083.9691.43639.9490.152-0.9213.2882.095-5.78940.162
1138II_DT70DG71:DC-71DA-70_JJ0.2240.0092.728-4.7943.18327.72-0.593-1.3792.6376.5549.87128.299

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.