A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
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NDB ID: 5B31  PDB ID: 5B31 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT292_J0.2140.5580.017-39.841-0.52-1.167
14I_DA4:DT289_J0.1370.1280.28111.801-19.1634.627
15I_DA5:DT288_J0.2770.0540.4234.553-14.58810.401
17I_DA7:DT286_J0.6530.2370.1737.309-12.38113.139
111I_DA11:DT282_J0.110.211-0.33-1.2120.228-17.599
117I_DA17:DT276_J0.2210.1860.5825.299-12.885-2.196
119I_DA19:DT274_J-0.3460.0890.1314.827-14.837.294
124I_DA24:DT269_J0.4330.061-0.025-18.626-23.55411.97
127I_DA27:DT266_J0.336-0.1630.89110.059-15.3742.762
128I_DA28:DT265_J0.003-0.4240.037.214-7.3850.006
129I_DA29:DT264_J0.3690.2350.2520.013-12.446-3.017
130I_DA30:DT263_J0.9780.1330.0656.323-17.9753.16
135I_DA35:DT258_J0.4090.033-0.119-14.862-3.9242.241
141I_DA41:DT252_J0.731-0.5930.8471.938-7.423-13.025
142I_DA42:DT251_J0.4960.0750.18-1.465-2.265-4.754
143I_DA43:DT250_J0.6330.2210.5862.723-13.687-8.478
151I_DA51:DT242_J0.245-0.083-0.162-10.13-15.4733.024
154I_DA54:DT239_J-0.56-0.281-0.0748.058-32.05113.167
155I_DA55:DT238_J-1.349-0.304-0.253-11.896-25.7864.69
156I_DA56:DT237_J-1.030.070.46218.777-21.425-20.476
157I_DA57:DT236_J0.835-0.2831.88816.37-51.6213.703
161I_DA61:DT232_J-0.229-0.05-1.235-14.662-27.1215.715
167I_DA67:DT226_J-0.3680.0910.3250.969-30.752-0.779
172I_DA72:DT221_J-0.4510.3830.4175.189-4.44210.134
173I_DA73:DT220_J0.164-0.1190.185-0.745-9.4863.642
177I_DA77:DT216_J-0.024-0.051-0.1080.096-28.531-4.559
182I_DA82:DT211_J-0.036-0.0340.0244.188-15.6523.504
183I_DA83:DT210_J-0.025-0.1890.014.258-11.0015.029
185I_DA85:DT208_J0.313-0.1330.215-3.084-16.8522.976
195I_DA95:DT198_J0.187-0.233-0.314-3.264-6.51-0.934
199I_DA99:DT194_J0.964-0.0310.1162.403-30.982.404
1102I_DA102:DT191_J0.0390.089-0.072-0.99-16.65319.197
1109I_DA109:DT184_J0.329-0.2550.1069.854-25.467-1.78
1110I_DA110:DT183_J-0.331-0.1310.3351.5-14.4597.165
1111I_DA111:DT182_J0.885-0.030.772-0.444-16.6915.111
1113I_DA113:DT180_J0.231-0.083-0.354-4.122-5.18.219
1115I_DA115:DT178_J0.634-0.067-0.634-2.806-14.3647.462
1124I_DA124:DT169_J-0.655-0.033-2.1022.455-36.957-9.094
1126I_DA126:DT167_J0.892-0.223-0.843-28.878-19.8595.374
1127I_DA127:DT166_J0.733-0.084-0.135-26.84310.9238.431
1133I_DA133:DT160_J0.587-0.029-0.0755.411-17.7163.36
1139I_DA139:DT154_J1.658-0.1130.0075.864-12.21-1.746
1141I_DA141:DT152_J1.096-0.3910.1131.299-19.8291.302
13I_DC3:DG290_J-0.2820.019-0.78411.98-11.1932.458
19I_DC9:DG284_J-0.5210.001-0.142-2.65-19.9531.75
110I_DC10:DG283_J0.142-0.149-0.3895.98-13.446-7.13
112I_DC12:DG281_J-1.2380.413-0.1465.899-6.078-19.268
113I_DC13:DG280_J-0.6580.021-0.43-4.198-19.967-1.303
116I_DC16:DG277_J1.1310.225-0.30726.386-34.5034.979
122I_DC22:DG271_J0.349-0.240.05-21.402-22.59-15.24
125I_DC25:DG268_J-1.9030.4041.083-29.5925.63-3.186
126I_DC26:DG267_J0.099-0.2510.29212.407-12.8191.816
144I_DC44:DG249_J-0.7610.510.6220.131-12.34911.249
147I_DC47:DG246_J-0.9020.3580.484-1.07-28.12413.081
149I_DC49:DG244_J-0.4220.04-0.525-8.989-20.9397.898
150I_DC50:DG243_J-0.3740.342-0.5121.459-14.5886.444
153I_DC53:DG240_J-0.580.1790.2943.909-20.4869.088
160I_DC60:DG233_J-0.2660.280.0365.468-10.3097.4
166I_DC66:DG227_J-0.1820.046-0.0676.873-10.2633.974
169I_DC69:DG224_J0.1080.3820.696-2.648-23.4892.415
176I_DC76:DG217_J-0.33-0.0090.1232.605-2.0752.507
179I_DC79:DG214_J0.014-0.0910.722-3.428-25.836-2.016
184I_DC84:DG209_J0.21-0.236-0.2026.514-12.1412.172
188I_DC88:DG205_J0.08-0.1590.7693.522-30.592-2.005
189I_DC89:DG204_J0.378-0.3420.801-12.866-7.103-3.181
1101I_DC101:DG192_J0.3540.1510.436.005-25.3622.588
1107I_DC107:DG186_J-0.1030.529-1.18316.19-9.2944.442
1108I_DC108:DG185_J-0.4020.127-0.06318.99-26.859-8.139
1114I_DC114:DG179_J-0.346-0.3980.0920.88-11.209-5.813
1116I_DC116:DG177_J0.616-0.0090.402-7.384-27.2878.543
1129I_DC129:DG164_J-0.7120.3310.879-14.439-8.2067.85
1132I_DC132:DG161_J-0.766-0.116-0.3041.921-25.3286.191
115I_DG15:DC278_J-1.348-0.187-0.025-5.046-12.952-4.317
118I_DG18:DC275_J-0.230.3110.717.789-12.76710.329
131I_DG31:DC262_J-0.428-0.282-0.76-6.88-7.7511.723
133I_DG33:DC260_J0.1530.108-0.0885.007-12.646.445
139I_DG39:DC254_J-0.2130.0840.039-1.496-0.741-8.738
140I_DG40:DC253_J1.0020.2960.8643.827-17.496-0.248
146I_DG46:DC247_J-1.2010.457-0.185-9.225-13.18519.154
158I_DG58:DC235_J-0.6220.27-0.307-27.059-28.3214.348
159I_DG59:DC234_J-0.981-0.1060.064-1.768-9.1164.83
163I_DG63:DC230_J0.241-0.425-0.207-13.419-10.816-1.627
168I_DG68:DC225_J-0.995-0.3870.243.903-7.368-1.261
171I_DG71:DC222_J0.2330.027-0.239-3.779-5.3829.432
178I_DG78:DC215_J0.5980.080.2784.386-5.0537.792
181I_DG81:DC212_J-0.47-0.075-0.242-7.157-11.9945.671
187I_DG87:DC206_J-0.261-0.08-0.231-0.4440.0025.667
194I_DG94:DC199_J-0.02-0.637-0.613-6.978-7.248-2.244
197I_DG97:DC196_J-0.5140.1950.2659.497-13.0521.791
198I_DG98:DC195_J0.236-0.142-0.0958.318-6.2483.466
1100I_DG100:DC193_J0.092-0.1010.76816.2260.2794.462
1103I_DG103:DC190_J0.8930.294-0.69-19.388-14.799-7.597
1121I_DG121:DC172_J2.420.5511.89133.621-1.8364.159
1122I_DG122:DC171_J-1.338-0.0520.25225.9824.586-23.871
1125I_DG125:DC168_J1.2980.01-1.463-9.924-11.094-6.366
1131I_DG131:DC162_J0.626-0.381-0.284-10.628-16.993.472
1134I_DG134:DC159_J-0.032-0.266-0.2665.108-3.8030.875
1135I_DG135:DC158_J1.423-0.051-0.395-1.86-12.8280.535
1137I_DG137:DC156_J0.0920.294-0.338-5.485-18.29614.173
1138I_DG138:DC155_J-1.009-0.067-0.068-6.977-9.4613.013
1144I_DG144:DC149_J1.37-0.101-0.629-2.762-26.446-0.352
12I_DT2:DA291_J-0.1110.1010.04-6.792-3.5012.205
16I_DT6:DA287_J0.188-0.056-0.05315.948-7.183-1.609
18I_DT8:DA285_J0.6080.224-0.38512.558-12.85214.986
114I_DT14:DA279_J0.7810.1470.022-8.151-17.0445.339
120I_DT20:DA273_J-0.7370.301-0.2455.86-30.9256.183
121I_DT21:DA272_J0.35-0.008-0.830.713-24.0572.657
123I_DT23:DA270_J0.011-0.1180.284-20.964-23.342.655
132I_DT32:DA261_J-0.379-0.499-0.4879.463-7.666-1.719
134I_DT34:DA259_J-0.8130.064-0.35610.496-13.3765.623
136I_DT36:DA257_J-0.059-0.3480.659-12.08-8.1143.181
137I_DT37:DA256_J-0.608-0.2160.625-10.703-18.4263.049
138I_DT38:DA255_J0.113-0.003-0.187-2.268-28.7468.767
145I_DT45:DA248_J-1.05-0.3810.892-11.106-26.629-10.674
148I_DT48:DA245_J-0.473-0.194-1.21413.111-23.159-3.189
152I_DT52:DA241_J-0.0170.086-1.1715.442-26.549-10.213
162I_DT62:DA231_J0.2090.027-0.294-9.332-28.3126.391
164I_DT64:DA229_J0.118-0.0280.321-3.583-9.1548.553
165I_DT65:DA228_J0.29-0.069-0.0522.457-16.0782.82
170I_DT70:DA223_J-0.638-0.179-0.096-9.667-13.429-1.605
174I_DT74:DA219_J-0.286-0.3010.255-2.962-9.939-0.127
175I_DT75:DA218_J0.0610.009-0.4378.342-12.9566.938
180I_DT80:DA213_J-0.252-0.104-0.173-10.335-13.1474.055
186I_DT86:DA207_J-0.471-0.058-0.104-5.477-16.9130.932
190I_DT90:DA203_J-0.118-0.1590.774-9.981-26.9562.854
191I_DT91:DA202_J0.1810.029-0.357-0.003-20.684-0.131
192I_DT92:DA201_J-0.2760.022-0.2781.313-12.4615.942
193I_DT93:DA200_J0.497-0.35-0.661-1.814-15.742.65
196I_DT96:DA197_J-0.041-0.011-0.054-2.311-7.2078.002
1104I_DT104:DA189_J-0.8360.3090.117-0.522-7.814-2.279
1105I_DT105:DA188_J-0.5020.0210.2159.58-8.069-0.394
1106I_DT106:DA187_J0.173-0.299-0.555.33-21.3656.644
1112I_DT112:DA181_J-0.2450.271-0.0743.605-13.4425.335
1117I_DT117:DA176_J-0.6560.4350.314-15.926-14.296.39
1118I_DT118:DA175_J0.294-0.010.321-9.963-15.4793.479
1119I_DT119:DA174_J-0.627-0.3010.505-10.042-11.161-2.574
1120I_DT120:DA173_J1.625-0.190.633-15.115-31.4959.948
1123I_DT123:DA170_J0.1550.202-0.70239.897-7.744-17.618
1128I_DT128:DA165_J-0.2340.1110.67-9.695-12.4150.1
1130I_DT130:DA163_J-1.236-0.245-0.006-17.285-34.189-4.516
1136I_DT136:DA157_J0.083-0.5480.1143.126-22.1949.165
1140I_DT140:DA153_J-1.681-0.3460.478-0.373-8.5875.921
1142I_DT142:DA151_J0.147-0.090.2040.538-12.2515.033
1143I_DT143:DA150_J-0.189-0.4590.0215.356-5.98-5.694
1145I_DT146:DA147_J-2.6580.4680.17621.727-9.063-35.524

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.