A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 5BNG  PDB ID: 5BNG 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12L_DA28:DT11_M-0.655-0.1560.6962.426-4.88-5.175
19L_DA35:DT4_M0.4270.6640.22534.429-6.89610.215
14L_DC30:DG9_M0.8170.085-0.02-0.511-1.2662.817
18L_DC34:DG5_M0.374-0.1520.17414.658-9.992-4.966
13L_DG29:DC10_M0.5880.5450.3828.011-6.0753.073
16L_DG32:DC7_M-0.9270.65-0.115-21.251-5.7727.736
11L_DT27:DA12_M-0.311-0.1590.708-10.865-16.75-1.858
15L_DT31:DA8_M0.1210.3440.421-15.661-11.894-8.723
17L_DT33:DA6_M0.949-0.1730.88310.296-10.3548.822
117C_DA35:DT4_D1.5690.3820.68214.809-11.29318.535
113C_DC30:DG9_D-0.182-0.134-0.233-0.484-6.922-4.495
116C_DC34:DG5_D0.015-0.1711.109-1.2741.713-6.353
112C_DG29:DC10_D0.3980.1390.2576.334-6.9941.395
115C_DG32:DC7_D-0.742-0.3280.185-4.727-3.741-6.815
110C_DT26:DA13_D-1.00.1360.727-31.344-9.9270.843
111C_DT27:DA12_D-1.027-0.318-0.144-19.18-21.394-13.366
114C_DT31:DA8_D-0.353-0.0790.76-22.968-6.438-11.723

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.