5BNG: Base Pair Morphology Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 5BNG PDB ID: 5BNG

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	L_DA28:DT11_M	-0.655	-0.156	0.696	2.426	-4.88	-5.175
1	9	L_DA35:DT4_M	0.427	0.664	0.225	34.429	-6.896	10.215
1	4	L_DC30:DG9_M	0.817	0.085	-0.02	-0.511	-1.266	2.817
1	8	L_DC34:DG5_M	0.374	-0.152	0.174	14.658	-9.992	-4.966
1	3	L_DG29:DC10_M	0.588	0.545	0.382	8.011	-6.075	3.073
1	6	L_DG32:DC7_M	-0.927	0.65	-0.115	-21.251	-5.772	7.736
1	1	L_DT27:DA12_M	-0.311	-0.159	0.708	-10.865	-16.75	-1.858
1	5	L_DT31:DA8_M	0.121	0.344	0.421	-15.661	-11.894	-8.723
1	7	L_DT33:DA6_M	0.949	-0.173	0.883	10.296	-10.354	8.822
1	17	C_DA35:DT4_D	1.569	0.382	0.682	14.809	-11.293	18.535
1	13	C_DC30:DG9_D	-0.182	-0.134	-0.233	-0.484	-6.922	-4.495
1	16	C_DC34:DG5_D	0.015	-0.171	1.109	-1.274	1.713	-6.353
1	12	C_DG29:DC10_D	0.398	0.139	0.257	6.334	-6.994	1.395
1	15	C_DG32:DC7_D	-0.742	-0.328	0.185	-4.727	-3.741	-6.815
1	10	C_DT26:DA13_D	-1.0	0.136	0.727	-31.344	-9.927	0.843
1	11	C_DT27:DA12_D	-1.027	-0.318	-0.144	-19.18	-21.394	-13.366
1	14	C_DT31:DA8_D	-0.353	-0.079	0.76	-22.968	-6.438	-11.723

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.