A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 5BNG  PDB ID: 5BNG 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12LL_DA28DG29:DC10DT11_MM0.865-0.6883.2183.224-0.81135.372-1.009-0.9483.295-1.33-5.29235.523
14LL_DC30DT31:DA8DG9_MM-0.878-0.9883.682-0.7233.32830.655-2.5781.4933.5766.271.36330.839
18LL_DC34DA35:DT4DG5_MM1.0380.8432.9465.896-2.74837.2061.629-0.9063.002-4.266-9.15637.751
13LL_DG29DC30:DG9DC10_MM-0.124-0.4183.462.3565.1538.526-1.2820.4853.3667.755-3.54738.925
16LL_DG32DT33:DA6DC7_MM0.136-0.1422.484-8.98211.4432.027-1.521-1.2352.19419.52615.3335.096
11LL_DT27DA28:DT11DA12_MM-0.2240.3952.845-4.728-0.57738.7870.652-0.1622.846-0.8647.08639.067
15LL_DT31DG32:DC7DA8_MM1.5130.1993.3915.0415.28933.473-0.557-1.7173.5649.049-8.62434.239
17LL_DT33DC34:DG5DA6_MM-1.207-0.3023.1760.334-1.72433.718-0.2482.1313.175-2.969-0.57533.762
112CC_DC30DT31:DA8DG9_DD-0.086-1.0214.065-2.063-0.07833.792-1.738-0.2664.065-0.1343.54533.853
115CC_DC34DA35:DT4DG5_DD1.620.253.1115.144-1.06239.8240.482-1.7863.279-1.551-7.51240.155
111CC_DG29DC30:DG9DC10_DD-0.343-0.8423.3482.9333.54835.317-1.8960.9913.2135.817-4.80935.607
114CC_DG32DC34:DG5DC7_DD0.4-2.1126.546-6.4439.69865.774-2.672-0.8626.168.8585.88566.683
19CC_DT26DT27:DA12DA13_DD0.32-0.8993.07811.440.00630.719-1.5961.3293.0030.011-20.71532.732
110CC_DT27DG29:DC10DA12_DD1.6010.916.132-6.3282.13577.5490.612-1.6076.0271.7015.04377.791
113CC_DT31DG32:DC7DA8_DD0.9840.2392.7926.8693.37535.295-0.037-0.7282.9355.487-11.16736.09

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.