A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 12-Aug-2022 number of released structures: 12231
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NDB ID: 5CD1  PDB ID: 5CD1 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18M_A7:U66_M-0.0260.193-0.3864.717-25.8856.779
117M_A23:U12_M-0.4990.4630.5169.231-19.8241.39
120M_A26:G44_M0.4991.9050.26726.495-24.866-31.233
123M_A29:U41_M-0.012-0.061-0.0847.01-25.1-5.571
125M_A31:U39_M-0.6180.2370.257-9.84-31.49411.742
110M_A50:U64_M-0.320.087-0.134-2.769-21.253-7.961
13M_C2:G71_M-0.363-0.153-1.41115.933-27.1761.232
14M_C3:G70_M-0.083-0.070.512-1.506-14.514-3.172
15M_C4:G69_M-0.8020.387-0.6770.492-1.962-3.315
119M_C25:G10_M-0.1470.126-0.50910.317-9.448-6.725
122M_C28:G42_M-0.1520.290.67810.165-15.8694.136
126M_C32:A38_M1.244-0.0110.883-20.794-20.2814.681
19M_C49:G65_M-0.908-0.0631.277-2.251-16.557-4.512
11M_G0:G73_M-7.149-1.579-0.658-5.16125.568-36.309
12M_G1:C72_M-0.3620.161-0.9043.089-6.223-19.434
16M_G5:C68_M0.4230.6230.242-14.939-11.29110.29
17M_G6:U67_M-1.878-0.220.652-0.842-8.5242.242
116M_G22:C13_M0.1750.195-0.089-18.592-7.191-0.693
118M_G24:C11_M0.135-0.13-0.4778.941-19.798-3.99
124M_G30:C40_M-0.53-0.244-0.546-4.541-31.084-5.198
111M_G51:C63_M0.6820.103-1.664-21.441-10.493-17.818
112M_G52:C62_M1.0010.372-1.405-27.555-2.666-25.116
113M_G53:C61_M0.0310.281-0.023-10.4953.017-1.943
115M_U8:A21_M-0.887-0.3941.9535.541-20.701-176.295
121M_U27:A43_M0.540.2760.53211.726-29.028-13.565
114M_U54:U60_M2.754-1.982-1.7796.82613.902-9.862
134N_A7:U66_N0.302-0.118-0.5155.913-17.3281.44
141N_A23:A9_N4.736-4.9850.822-42.952-15.506177.281
144N_A26:G44_N0.2631.6150.03927.618-19.344-23.172
147N_A29:U41_N0.1390.0560.2792.637-23.764-1.743
149N_A31:U39_N0.8820.001-0.052-10.197-31.874-2.392
136N_A50:U64_N-0.407-0.105-0.921-9.455-23.112-9.856
129N_C2:G71_N-0.1430.4130.0139.216-17.7279.213
130N_C3:G70_N0.5570.175-0.21619.708-15.5261.07
131N_C4:G69_N-0.2860.395-0.70216.265-16.644-0.351
143N_C25:G10_N-0.6150.092-1.17514.219-4.643-15.262
146N_C28:G42_N0.3670.0090.13610.746-21.9482.838
150N_C32:A38_N2.61-0.3650.782-16.514-13.753-4.657
135N_C49:G65_N-0.7350.392-0.67719.9577.983-10.388
127N_G0:C75_N-0.5620.0720.288-5.56731.8871.882
128N_G1:C72_N-1.03-0.230.003-11.742-17.727-10.218
132N_G5:C68_N0.2770.37-0.3831.821-17.2219.146
133N_G6:U67_N-1.685-0.0851.1211.141-10.2734.412
140N_G22:C13_N-0.3230.121-0.682-15.2251.882-1.755
142N_G24:C11_N0.167-0.052-0.4265.932-20.941-7.045
148N_G30:C40_N-0.738-0.363-0.0460.484-29.689-11.587
137N_G51:C63_N0.840.527-1.132-21.457-12.817.695
138N_G52:C62_N0.9910.037-1.704-19.504-8.346-12.302
139N_U8:A14_N3.126-6.877-0.408-18.0819.104142.037
145N_U27:A43_N1.185-0.1941.11410.4-29.972-4.784
151N_U33:A37_N0.7290.13-0.31614.76310.3031.922
152N_U55:C61_N4.156-1.3141.0124.11146.69837.482

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.