A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
Search for released structures

NDB ID: 5CPJ  PDB ID: 5CPJ 


Base Pair Hydrogen Bonding Classification

CSV Format

Model NumberPair NumberPair NameLeontis / Westhof ClassificationSaenger Classification
112I_5CM14:DG133_J10
160I_5CM73:DG74_J119
182I_5CM96:DG51_J00
1105I_5CM122:DG25_J10
1113I_5CM132:DG15_J00
11I_DA1:DT146_J120
14I_DA5:DT142_J120
15I_DA6:DT141_J120
16I_DA7:DT140_J120
19I_DA11:DT136_J120
113I_DA16:DT131_J120
114I_DA17:DT130_J120
117I_DA22:DT125_J120
120I_DA25:DT122_J120
124I_DA29:DT118_J120
128I_DA34:DT113_J120
129I_DA35:DT112_J120
130I_DA36:DT111_J120
133I_DA39:DT108_J120
134I_DA40:DT107_J120
136I_DA44:DT103_J00
137I_DA45:DT102_J120
148I_DA61:DT86_J120
149I_DA62:DT85_J120
150I_DA63:DT84_J120
154I_DA67:DT80_J00
155I_DA68:DT79_J120
162I_DA75:DT72_J120
163I_DA76:DT71_J120
165I_DA78:DT69_J00
170I_DA84:DT63_J120
171I_DA85:DT62_J10
172I_DA86:DT61_J120
176I_DA90:DT57_J00
177I_DA91:DT56_J00
184I_DA98:DT49_J00
185I_DA99:DT48_J120
192I_DA108:DT39_J120
193I_DA109:DT38_J120
197I_DA113:DT34_J120
198I_DA114:DT33_J120
1101I_DA117:DT30_J120
1107I_DA124:DT23_J120
1108I_DA125:DT22_J120
1110I_DA129:DT18_J120
1114I_DA135:DT12_J120
1118I_DA140:DT7_J120
1121I_DA145:DA1_J00
13I_DC4:DG143_J119
119I_DC24:DG123_J119
145I_DC58:DG89_J119
147I_DC60:DG87_J119
164I_DC77:DG70_J00
168I_DC81:DG66_J119
179I_DC93:DG54_J119
1100I_DC116:DG31_J119
1119I_DC142:DG5_J119
17I_DG9:DC138_J00
18I_DG10:DC137_J119
116I_DG20:DC127_J10
123I_DG28:DC119_J119
126I_DG32:DC115_J119
127I_DG33:DC114_J119
132I_DG38:DC109_J119
135I_DG43:DC104_J119
141I_DG51:DC96_J10
144I_DG56:DC92_J10
152I_DG65:DC82_J119
153I_DG66:DC81_J00
161I_DG74:5CM73_J119
166I_DG79:DC68_J119
167I_DG80:DC67_J119
174I_DG88:DC59_J119
175I_DG89:DC58_J119
183I_DG97:5CM50_J119
187I_DG101:DC46_J10
188I_DG102:DC45_J119
191I_DG107:5CM40_J00
195I_DG111:DC36_J119
1106I_DG123:5CM24_J119
1109I_DG127:DC20_J10
1116I_DG137:DC10_J00
1117I_DG138:DC9_J10
1120I_DG144:DC3_J119
12I_DT2:DA145_J120
110I_DT12:DA135_J120
111I_DT13:DA134_J120
115I_DT18:DA129_J00
118I_DT23:DA124_J120
121I_DT26:DA121_J120
122I_DT27:DA120_J120
125I_DT31:DA116_J120
131I_DT37:DA110_J00
138I_DT46:DA101_J120
139I_DT49:DA98_J120
140I_DT50:DA97_J120
142I_DT53:DA94_J120
143I_DT54:DA93_J120
146I_DT59:DA88_J120
151I_DT64:DA83_J120
156I_DT69:DA78_J120
157I_DT70:DA77_J120
158I_DT71:DA76_J120
159I_DT72:DA75_J120
169I_DT82:DA65_J120
173I_DT87:DA60_J10
178I_DT92:DA55_J00
180I_DT94:DA53_J00
181I_DT95:DA52_J120
186I_DT100:DA47_J120
189I_DT104:DA43_J120
190I_DT105:DA42_J120
194I_DT110:DA37_J120
196I_DT112:DA35_J120
199I_DT115:DA32_J120
1102I_DT119:DA28_J120
1103I_DT120:DA27_J120
1104I_DT121:DA26_J120
1111I_DT130:DA17_J120
1112I_DT131:DA16_J120
1115I_DT136:DA11_J120

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)