A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 5CPJ  PDB ID: 5CPJ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
112I_5CM14:DG133_J-0.005-0.1210.297-9.942-40.085-16.751
160I_5CM73:DG74_J-1.1550.040.171-8.222-9.5155.079
182I_5CM96:DG51_J2.1120.7840.71-0.281-10.3618.123
1105I_5CM122:DG25_J-1.3110.676-0.54334.586-12.25910.806
1113I_5CM132:DG15_J-1.8890.634-1.235-2.097-38.349-22.877
11I_DA1:DT146_J1.857-0.092-0.52919.155-10.292-8.503
14I_DA5:DT142_J0.322-0.289-0.9391.346-28.3087.303
15I_DA6:DT141_J1.531-0.221-0.0227.573-31.184-11.737
16I_DA7:DT140_J0.805-0.1490.269-21.076-30.774-9.972
19I_DA11:DT136_J-0.287-0.110.1460.57-23.281-16.8
113I_DA16:DT131_J0.513-0.2850.799-5.809-28.169-18.011
114I_DA17:DT130_J-0.072-0.150.7533.739-1.082-7.121
117I_DA22:DT125_J-0.657-0.4251.0328.756-8.534-9.882
120I_DA25:DT122_J-0.276-0.1420.489-14.983-0.979-4.913
124I_DA29:DT118_J0.119-0.064-0.37-11.265-5.555-7.434
128I_DA34:DT113_J0.28-0.1550.461-1.378-9.39-5.557
129I_DA35:DT112_J0.005-0.0440.171-26.955-12.857-6.707
130I_DA36:DT111_J-0.86-0.4030.038-17.48-27.693-6.147
133I_DA39:DT108_J0.863-0.0520.4014.0342.557-7.635
134I_DA40:DT107_J0.3810.020.1474.046-19.865-7.931
136I_DA44:DT103_J-2.309-0.526-1.639-39.594-25.2610.007
137I_DA45:DT102_J-0.943-0.422-0.042-4.731-29.685-11.366
148I_DA61:DT86_J-0.214-0.213-0.954-16.592-4.607-1.434
149I_DA62:DT85_J0.391-0.229-1.175-4.417-9.003-2.014
150I_DA63:DT84_J1.092-0.418-1.1182.394-17.8553.731
154I_DA67:DT80_J0.7720.1331.5664.761-24.679-12.706
155I_DA68:DT79_J0.493-0.0991.09212.34512.367-2.852
162I_DA75:DT72_J0.047-0.015-0.246-29.081-2.3890.585
163I_DA76:DT71_J0.3510.0420.717-20.014-7.638-1.662
165I_DA78:DT69_J-1.6250.0330.342-33.974-22.409-1.099
170I_DA84:DT63_J-0.632-0.19-0.114-34.8127.907-0.415
171I_DA85:DT62_J-0.984-0.2771.092-9.721-14.2712.646
172I_DA86:DT61_J-1.192-0.391-0.805-29.271-21.657-3.198
176I_DA90:DT57_J-1.775-0.4130.541-13.589-18.983-5.336
177I_DA91:DT56_J0.5590.3640.515-14.39-10.6451.043
184I_DA98:DT49_J1.746-0.0760.7931.978-14.2548.83
185I_DA99:DT48_J0.568-0.0310.05725.968-37.841-10.757
192I_DA108:DT39_J0.782-0.1150.602-2.537-23.283-16.114
193I_DA109:DT38_J-0.52-0.3811.03811.564-4.714-3.877
197I_DA113:DT34_J-0.639-0.243-0.429-3.261-10.791-6.026
198I_DA114:DT33_J-0.638-0.2360.09115.47-14.11-4.77
1101I_DA117:DT30_J1.012-0.140.656.239-9.405-8.558
1107I_DA124:DT23_J0.122-0.0630.00816.388-17.464-1.637
1108I_DA125:DT22_J0.683-0.007-0.199-2.253-13.297-6.902
1110I_DA129:DT18_J0.962-0.141-0.387-13.111-45.715-11.425
1114I_DA135:DT12_J0.006-0.073-1.587-36.094-14.213-4.034
1118I_DA140:DT7_J-0.4650.169-0.021-23.788-36.361-6.388
1121I_DA145:DA1_J1.5361.6680.36117.6074.27-43.364
13I_DC4:DG143_J1.605-0.602-0.91434.589-28.9935.402
119I_DC24:DG123_J-1.310.145-0.5811.697-2.166-2.393
145I_DC58:DG89_J-1.039-0.1960.05320.248-27.048-3.134
147I_DC60:DG87_J0.848-0.556-1.90834.542-21.63710.62
164I_DC77:DG70_J-2.1070.2110.749-29.913-24.0741.182
168I_DC81:DG66_J-0.667-0.0250.532-20.8921.1520.094
179I_DC93:DG54_J-0.828-0.2-0.792.493-2.115-1.913
1100I_DC116:DG31_J0.555-0.391-1.26413.677-18.1786.302
1119I_DC142:DG5_J0.129-0.1720.208-18.519-24.2771.141
17I_DG9:DC138_J-0.0481.702-0.236-25.742-21.23233.845
18I_DG10:DC137_J-0.173-0.120.4199.206-13.018-2.221
116I_DG20:DC127_J0.240.623-0.427-19.847-45.94216.604
123I_DG28:DC119_J-1.16-0.555-0.295-15.041-30.1723.242
126I_DG32:DC115_J1.008-0.133-0.023-12.6650.066-2.849
127I_DG33:DC114_J0.851-0.170.89213.4345.395-0.699
132I_DG38:DC109_J-0.741-0.7941.267-1.474-19.578-11.142
135I_DG43:DC104_J-0.668-0.247-0.096-18.7-25.304-1.288
141I_DG51:DC96_J-2.045-0.169-0.57-21.078-34.9420.605
144I_DG56:DC92_J2.1771.086-0.159-31.786-7.23835.259
152I_DG65:DC82_J1.156-0.1690.32318.40816.688-1.255
153I_DG66:DC81_J-1.110.61-0.3126.777-2.75917.917
161I_DG74:5CM73_J0.712-0.357-0.81-5.445-25.82513.233
166I_DG79:DC68_J1.143-0.1441.313-14.563-10.87-8.144
167I_DG80:DC67_J-0.507-0.1290.182-15.8666.0280.224
174I_DG88:DC59_J0.066-0.2261.00610.612-38.126-6.63
175I_DG89:DC58_J-0.077-0.1340.46-6.0378.025-0.033
183I_DG97:5CM50_J-1.542-0.4780.9577.125-16.099-9.351
187I_DG101:DC46_J2.3050.6191.2072.126-23.91221.485
188I_DG102:DC45_J0.701-0.137-0.75-16.642-18.571.416
191I_DG107:5CM40_J-2.923-0.497-0.433-0.81-12.0729.323
195I_DG111:DC36_J1.268-0.191-0.1389.290.555-2.075
1106I_DG123:5CM24_J-0.4470.039-0.53313.433-17.8127.409
1109I_DG127:DC20_J0.5480.8040.259-3.326-25.48919.608
1116I_DG137:DC10_J-2.474-0.223-0.4765.644-24.9658.874
1117I_DG138:DC9_J-1.4640.35-0.89-6.713-19.84519.913
1120I_DG144:DC3_J-0.766-0.293-0.491-14.425-12.409-0.627
12I_DT2:DA145_J0.289-0.2910.269-12.618-41.13-13.869
110I_DT12:DA135_J0.463-1.0151.18.543-21.756-19.198
111I_DT13:DA134_J0.826-0.45-0.173-2.481-39.923-8.452
115I_DT18:DA129_J-2.062-0.2020.99211.999-23.572-2.669
118I_DT23:DA124_J0.944-0.348-0.2237.065-13.948-5.547
121I_DT26:DA121_J-1.444-0.1551.133-25.741-14.517-14.376
122I_DT27:DA120_J-1.033-0.0070.57-9.926-14.774-19.107
125I_DT31:DA116_J-0.431-0.084-0.412-8.419-30.447-5.739
131I_DT37:DA110_J-1.2370.1440.822-11.227-12.89810.068
138I_DT46:DA101_J-1.657-0.310.97-26.698-19.072-12.507
139I_DT49:DA98_J0.959-0.5470.84615.612-2.086-2.346
140I_DT50:DA97_J-1.251-0.148-0.225.835-13.738-6.3
142I_DT53:DA94_J1.145-0.4250.59823.859-9.825-4.981
143I_DT54:DA93_J-1.396-0.276-0.894-13.747-13.64910.722
146I_DT59:DA88_J-0.174-0.065-0.0854.819-16.235-2.95
151I_DT64:DA83_J-0.476-0.186-0.7172.96-27.1230.813
156I_DT69:DA78_J-1.438-0.0771.128.111-17.704-12.989
157I_DT70:DA77_J-0.432-0.3691.11111.291-5.685-5.716
158I_DT71:DA76_J-0.651-0.284-1.17518.93-24.5648.441
159I_DT72:DA75_J-1.16-0.355-1.15117.115-13.7573.402
169I_DT82:DA65_J0.097-0.150.055-18.034-13.4070.431
173I_DT87:DA60_J-0.9350.1180.33-6.374-5.05619.337
178I_DT92:DA55_J-0.3180.5830.5437.3562.56614.587
180I_DT94:DA53_J-1.77-0.216-2.2812.742-27.713-5.495
181I_DT95:DA52_J0.324-0.395-0.537-9.141-36.1523.674
186I_DT100:DA47_J0.908-0.4340.628-5.949-12.049-7.895
189I_DT104:DA43_J-0.6270.0130.05716.848-9.312-4.261
190I_DT105:DA42_J-1.051-0.1050.3657.279-32.112-18.068
194I_DT110:DA37_J-0.825-0.1590.1352.836-3.564-0.803
196I_DT112:DA35_J-0.3-0.163-0.67817.7581.759-0.077
199I_DT115:DA32_J-0.612-0.041-0.35218.059-17.7747.029
1102I_DT119:DA28_J1.0930.0090.1615.062-7.881-1.798
1103I_DT120:DA27_J0.158-0.099-0.99623.694-19.375-1.368
1104I_DT121:DA26_J0.708-0.189-0.33819.615-12.266-1.882
1111I_DT130:DA17_J-0.141-0.334-1.33819.172-45.1882.915
1112I_DT131:DA16_J0.623-0.153-0.5826.932-21.698-1.954
1115I_DT136:DA11_J-1.154-0.2740.849-2.9744.251-3.308

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.