A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: 5CPJ  PDB ID: 5CPJ 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
112II_5CM14DA16:DT131DG133_JJ1.008-0.66.6576.759-3.94876.09-0.247-0.4086.733-3.195-5.4776.43
157II_5CM73DG74:5CM73DG74_JJ0.4931.2283.3366.3521.25943.707-0.337-0.0523.57726.616-7.95148.769
179II_5CM96DG97:5CM50DG51_JJ-1.820.1593.13-0.4328.6523.562-2.1184.0673.02820.3231.01525.082
1102II_5CM122DG123:5CM24DG25_JJ0.0371.193.9263.22118.60740.802-0.6170.3294.06825.13-4.3544.79
11II_DA1DT2:DA145DT146_JJ-0.598-1.5294.351-6.285-5.58836.899-1.367-0.1934.564-8.699.77437.813
14II_DA5DA6:DT141DT142_JJ-1.0511.1513.031-7.86410.18440.6570.5570.6543.35114.23310.9942.562
15II_DA6DA7:DT140DT141_JJ-1.071-0.9213.965-5.541-5.59925.411-0.1220.4674.203-12.35512.22726.585
16II_DA7DG9:DC138DT140_JJ0.9921.2445.8437.1553.26176.1550.832-0.4235.9442.637-5.78676.499
19II_DA11DT12:DA135DT136_JJ-0.35-0.7763.563-10.595-10.86936.4420.319-0.9153.605-16.52716.1139.378
113II_DA16DA17:DT130DT131_JJ1.0381.1083.463-1.005-21.54641.593.181-1.3952.596-28.1851.31546.63
114II_DA17DT18:DA129DT130_JJ0.752-0.9952.915-3.1232.20829.365-2.353-2.0442.7424.3326.12929.608
116II_DA22DT23:DA124DT125_JJ0.392-0.8253.48211.531-3.2541.67-0.7710.6983.517-4.459-15.8243.285
119II_DA25DT26:DA121DT122_JJ-1.506-0.5133.711-3.907-5.72431.0090.2981.9093.897-10.5427.19631.756
123II_DA29DT31:DA116DT118_JJ-0.323-0.8016.7520.1417.07966.222-1.3060.3066.6456.46-0.12866.556
127II_DA34DA35:DT112DT113_JJ-0.777-0.9964.033-1.473-3.49540.551-0.9480.9134.126-5.032.1240.721
128II_DA35DA36:DT111DT112_JJ-0.327-0.4483.1121.9091.35731.311-1.0680.9433.0662.51-3.53131.397
129II_DA36DT37:DA110DT111_JJ0.376-0.6873.137-5.371-8.79232.7880.184-1.463.115-15.1179.23434.326
132II_DA39DA40:DT107DT108_JJ0.3980.1083.6630.5312.37228.077-2.558-0.6343.41224.074-1.03130.637
134II_DA44DA45:DT102DT103_JJ-1.2951.7222.405-20.1521.69740.1282.1310.1522.7892.30427.3744.748
135II_DA45DT46:DA101DT102_JJ-0.062-0.4983.868-5.993-4.85631.6250.126-1.1423.847-8.74810.79732.529
145II_DA61DA62:DT85DT86_JJ-0.115-0.0823.190.2858.24434.918-1.2840.2273.09113.506-0.46735.849
146II_DA62DA63:DT84DT85_JJ0.2880.863.0521.59510.57632.948-0.148-0.2433.1818.063-2.72434.594
147II_DA63DT64:DA83DT84_JJ-1.182-0.2772.894-6.91912.91225.7-3.0550.9742.6826.46614.18229.52
151II_DA67DA68:DT79DT80_JJ0.6630.5443.619-3.043-15.21235.8112.794-1.3913.084-23.4314.68738.926
152II_DA68DT69:DA78DT79_JJ-0.74-0.5473.4721.503-14.15225.6982.2851.8193.273-29.144-3.09429.317
159II_DA75DA76:DT71DT72_JJ-1.0610.0133.021-7.071-7.34136.4640.9220.7693.106-11.45911.03837.815
160II_DA76DC77:DG70DT71_JJ0.312-0.8873.5530.3683.32626.826-2.804-0.5683.4237.134-0.78827.03
162II_DA78DG79:DC68DT69_JJ-1.3641.5173.371-14.771-23.29748.9852.9750.5992.732-25.86916.40255.798
167II_DA84DA85:DT62DT63_JJ-1.1550.6212.932-3.114-13.73531.8142.8871.5162.555-23.6615.36434.719
168II_DA85DA86:DT61DT62_JJ-0.593-0.4163.8754.35416.6332.604-3.2731.6253.19927.379-7.16836.749
169II_DA86DT87:DA60DT61_JJ1.2850.3342.613-4.764-8.75135.011.466-2.5652.278-14.1957.72836.357
173II_DA90DA91:DT56DT57_JJ0.390.4673.175-2.9992.40848.9480.386-0.6883.1652.9013.61349.089
174II_DA91DT92:DA55DT56_JJ1.01-0.2012.665-1.851-3.57626.2450.323-2.5932.593-7.8174.04526.546
181II_DA98DA99:DT48DT49_JJ-1.630.9393.29-1.842-9.53835.8582.732.3193.028-15.1512.92637.108
182II_DA99DT100:DA47DT48_JJ0.8980.0284.066-0.0660.28539.9750.001-1.3244.0650.4170.09639.976
189II_DA108DA109:DT38DT39_JJ0.642-0.0742.737-4.513-8.96733.6590.992-1.6252.568-15.0737.58635.083
190II_DA109DT110:DA37DT38_JJ-0.052-0.9563.7652.2-7.19632.612-0.2550.523.87-12.606-3.85433.446
194II_DA113DA114:DT33DT34_JJ-0.2881.1532.579-2.0344.7833.5341.3510.2272.7258.2243.49933.923
195II_DA114DT115:DA32DT33_JJ0.606-0.5243.0842.6668.95931.48-2.359-0.6462.87216.074-4.78332.804
198II_DA117DT119:DA28DT30_JJ-0.071-0.4986.7643.865-4.10773.795-0.1450.3126.77-3.415-3.21473.979
1104II_DA124DA125:DT22DT23_JJ-0.448-0.0423.785-0.189-1.83633.7560.2710.7363.784-3.1590.32633.805
1105II_DA125DG127:DC20DT22_JJ-0.2771.5326.128-0.09315.95279.2270.3850.216.29712.3930.07280.557
1106II_DA129DT130:DA17DT18_JJ-0.0851.9692.0965.317-24.47941.6453.3410.3070.859-31.274-6.79348.31
1109II_DA135DT136:DA11DT12_JJ1.8490.7822.44-19.986.16926.4090.756-5.1390.9911.48537.233.57
1113II_DA140DC142:DG5DT7_JJ-0.0640.2476.676-12.8195.7670.227-0.191-0.8416.6054.95711.03271.442
13II_DC4DA5:DT142DG143_JJ0.0170.3114.3814.4120.42430.589-3.3260.7973.82134.167-7.37736.903
118II_DC24DA25:DT122DG123_JJ0.2960.0544.092-7.3088.18938.233-1.109-1.4963.90312.19810.88739.72
142II_DC58DT59:DA88DG89_JJ0.8080.9293.5788.778-5.35547.6641.579-0.243.548-6.538-10.71748.697
144II_DC60DA61:DT86DG87_JJ-0.1610.5284.602-6.96225.04633.476-3.105-0.8444.01637.29810.36842.155
161II_DC77DA78:DT69DG70_JJ-0.1050.9723.5931.937-3.79838.5371.9670.4153.477-5.733-2.92438.763
165II_DC81DT82:DA65DG66_JJ0.131-0.1023.3491.53613.89635.2-1.990.03.09621.939-2.42637.793
176II_DC93DT94:DA53DG54_JJ-0.0170.5562.7229.7917.10820.13-2.472.1042.28838.909-22.26528.102
197II_DC116DA117:DT30DG31_JJ-0.590.5783.885-8.1333.8336.1810.286-0.393.966.05312.85337.245
1114II_DC142DG144:DC3DG5_JJ-0.7740.3296.42-9.6414.84467.211-0.792-0.0216.41213.1778.55769.237
17II_DG9DG10:DC137DC138_JJ-1.5591.6182.134-6.65612.24923.510.8781.9182.93427.2114.78627.282
18II_DG10DA11:DT136DC137_JJ-1.56-0.3143.199-5.3664.17634.667-1.1411.7723.3376.9258.89935.307
115II_DG20DA22:DT125DC127_JJ-2.0430.3836.118-22.284-5.1667.3090.6880.2296.407-4.52419.53870.654
122II_DG28DA29:DT118DC119_JJ-0.6241.213.186-11.488-11.6354.3141.9050.0392.957-12.42712.27556.541
125II_DG32DG33:DC114DC115_JJ-0.5010.3452.691-6.5766.08234.028-0.198-0.0022.75610.17611.00335.153
126II_DG33DA34:DT113DC114_JJ-0.462-0.9683.5652.59513.36729.091-4.2191.3152.81124.959-4.84632.058
131II_DG38DA39:DT108DC109_JJ0.6160.9613.6878.502-11.61143.4872.3660.0333.394-15.184-11.11845.696
133II_DG43DA44:DT103DC104_JJ1.321-0.1483.97413.38121.61726.39-4.1390.3073.28737.974-23.50736.486
138II_DG51DT53:DA94DC96_JJ-1.5181.6915.619-14.7985.16468.791.1430.3865.94.51212.92870.338
141II_DG56DC58:DG89DC92_JJ2.0141.6656.19-3.688-0.40875.141.388-1.866.093-0.3343.02375.218
149II_DG65DG66:DC81DC82_JJ1.569-0.0664.01512.715.3523.897-1.9050.8994.19311.751-27.91727.54
150II_DG66DA67:DT80DC81_JJ-1.7770.7523.39-11.007-7.62844.481.6561.2453.543-9.81614.16446.354
158II_DG74DA75:DT725CM73_JJ-0.926-0.5283.51-8.0776.99633.359-2.030.2113.45711.81713.64234.983
163II_DG79DG80:DC67DC68_JJ0.9260.4673.4126.949-4.27433.2661.51-0.4083.446-7.329-11.91634.224
164II_DG80DC81:DG66DC67_JJ-0.6330.1473.586-3.599-4.2632.6731.0490.4413.586-7.5046.3433.133
171II_DG88DG89:DC58DC59_JJ1.5121.0533.9777.397-6.97139.4272.468-1.1653.952-10.13-10.74940.665
172II_DG89DA90:DT57DC58_JJ-1.0670.2633.737-6.615-0.17227.2280.5920.3553.881-0.35813.79528.006
180II_DG97DA98:DT495CM50_JJ0.9890.9113.3497.428-9.9345.3971.979-0.6153.208-12.591-9.41946.973
184II_DG101DG102:DC45DC46_JJ-1.088-0.4843.7199.5117.18225.369-2.8094.6442.89115.32-20.2927.988
185II_DG102DT104:DA43DC45_JJ0.0130.5075.89-12.1235.2457.6290.028-1.145.8045.35912.39758.996
188II_DG107DA108:DT395CM40_JJ-2.8472.1143.738-8.815-22.43251.4583.6212.4643.062-24.3729.57756.472
192II_DG111DT112:DA35DC36_JJ-0.292-1.2643.1810.109-9.72129.921-0.450.5593.414-18.232-0.20431.427
1103II_DG123DA124:DT235CM24_JJ-0.7140.1433.191-5.17315.39837.291-1.5180.453.08322.8027.66140.559
1111II_DG137DG138:DC9DC10_JJ0.2130.5733.224-4.10715.59238.231-0.894-0.753.17622.6185.95741.375
1112II_DG138DA140:DT7DC9_JJ-1.0061.1436.832-16.6172.63878.830.738-0.1516.9322.05512.9580.319
1115II_DG144DA145:DA1DC3_JJ-0.173-1.2452.954-12.998-3.48160.526-1.062-0.3872.992-3.40812.72661.865
12II_DT2DC4:DG143DA145_JJ0.0240.7665.72916.579-1.83969.5950.7680.9765.596-1.589-14.3271.32
110II_DT12DT13:DA134DA135_JJ0.427-1.3473.95121.28918.19933.823-3.8571.8192.74926.387-30.86743.651
111II_DT135CM14:DG133DA134_JJ-0.901-1.0823.687-6.4537.55432.177-3.2490.3783.46313.2411.31233.637
117II_DT23DC24:DG123DA124_JJ0.530.073.0668.7918.60127.341-1.5860.7342.97817.139-17.51829.932
120II_DT26DT27:DA120DA121_JJ-0.155-0.4122.9154.63-20.89543.4091.0110.5252.798-26.425-5.85648.168
121II_DT27DG28:DC119DA120_JJ0.470.0583.3377.7317.20529.932-1.2760.6233.2813.433-14.41431.702
124II_DT31DG32:DC115DA116_JJ0.7910.7183.434-0.49614.76833.916-1.058-1.3243.43323.9540.80436.908
130II_DT37DG38:DC109DA110_JJ-0.8530.5152.936-6.028-10.81339.9771.7430.6282.806-15.3768.57141.775
136II_DT49DT50:DA97DA98_JJ-0.408-0.33.5259.6013.45929.012-1.2822.7593.1766.65-18.45930.718
137II_DT50DG51:DC96DA97_JJ2.2340.4243.5126.63427.85429.843-3.048-2.3113.20743.526-10.36741.131
139II_DT53DT54:DA93DA94_JJ0.895-1.4554.30516.9129.10118.909-6.2633.93.11221.726-40.37126.889
140II_DT54DG56:DC92DA93_JJ-1.3413.3986.00323.80533.16556.4940.4283.0426.11231.015-22.26268.701
143II_DT59DC60:DG87DA88_JJ0.2330.5922.49315.0971.71834.4720.7431.1822.412.74-24.07837.579
148II_DT64DG65:DC82DA83_JJ0.3140.1153.225-11.8260.70441.4020.089-1.5713.0310.97316.32842.992
153II_DT69DT70:DA77DA78_JJ0.695-0.5843.235-1.959-7.61540.492-0.008-1.1983.253-10.8782.79841.216
154II_DT70DT71:DA76DA77_JJ0.777-0.0892.86719.4941.94738.532-0.3020.7482.9122.745-27.48443.057
155II_DT71DT72:DA75DA76_JJ0.6260.3313.333-1.44.01631.0-0.162-1.4313.3187.4692.60431.283
156II_DT725CM73:DG74DA75_JJ0.771-0.3444.009-5.22.61229.88-1.284-2.723.7815.0069.96730.429
166II_DT82DA84:DT63DA65_JJ-0.259-0.2086.922-15.8424.58465.781-1.992-0.9466.43621.57213.971.316
170II_DT87DG88:DC59DA60_JJ-1.7441.142.971-3.407-13.34245.8282.3481.9152.675-16.6944.26347.745
175II_DT92DC93:DG54DA55_JJ-0.507-0.5263.1919.92520.01826.758-3.6712.2322.03436.269-17.98134.729
177II_DT94DT95:DA52DA53_JJ0.3340.9083.969-11.4618.85939.9870.143-1.8993.84612.4716.13242.429
178II_DT955CM96:DG51DA52_JJ0.9710.073.481-6.9249.01333.106-1.3-2.7053.13415.26811.72934.95
183II_DT100DG101:DC46DA47_JJ0.9980.3353.305-3.02-0.10346.1390.436-1.5283.236-0.1323.84946.233
186II_DT104DT105:DA42DA43_JJ-0.114-0.5413.284-3.152-1.30431.611-0.747-0.3743.299-2.3855.76531.79
187II_DT105DG107:5CM40DA42_JJ1.26-0.9256.6499.03829.66370.248-2.561-0.4736.03124.624-7.50375.975
191II_DT110DG111:DC36DA37_JJ-0.530.0893.224-0.104-0.79545.010.1860.6833.223-1.0390.13645.017
193II_DT112DA113:DT34DA35_JJ-0.129-0.833.658-2.47114.81931.594-3.787-0.1862.98625.4934.25134.902
196II_DT115DC116:DG31DA32_JJ0.0370.4943.678.3017.4436.103-0.3331.1673.61911.667-13.01737.73
199II_DT119DT120:DA27DA28_JJ-0.010.9223.0493.445-23.61338.0283.0870.2872.145-32.621-4.7644.659
1100II_DT120DT121:DA26DA27_JJ0.9630.4133.3480.3682.32140.6480.329-1.3433.3733.338-0.5340.713
1101II_DT1215CM122:DG25DA26_JJ1.420.2852.9043.466-3.63526.5981.449-2.2352.997-7.812-7.44927.06
1107II_DT130DT131:DA16DA17_JJ0.8931.9473.609-1.4573.72443.6552.21-1.3523.7244.9961.95543.829
1108II_DT1315CM132:DG15DA16_JJ-1.169-0.5864.0860.0093.61525.526-2.5642.6233.9668.13-0.01925.776
1110II_DT136DG137:DC10DA11_JJ-0.9740.1972.95512.3191.22828.7510.1683.7882.3552.341-23.48231.251

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.