A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 5CPK  PDB ID: 5CPK 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
152I_5CM60:DG86_J0.3090.423-0.77827.186-40.61526.611
172I_5CM83:DG63_J-0.750.011-0.596-3.107-10.3172.729
182I_5CM93:DG53_J-0.682-0.247-0.5991.437-9.551-3.72
195I_5CM109:DG37_J-0.4440.3780.1119.863-55.63524.023
1104I_5CM119:DG27_J-0.289-0.0620.0052.011-29.8757.893
1116I_5CM132:DG14_J2.7340.0780.209-4.992-7.0316.081
11I_DA1:DT145_J0.3120.0720.244-12.909-27.902-13.165
14I_DA4:DT142_J1.0290.0210.707-2.358-18.0227.32
18I_DA8:DT138_J0.911-0.15-0.03-7.225-41.975-1.462
19I_DA9:DT137_J-1.510.1231.32416.928-31.62517.172
112I_DA12:DT134_J-1.182-0.086-0.25312.201-16.919-17.074
115I_DA16:DT130_J0.4850.0320.6923.267-22.877-4.68
116I_DA17:DT129_J0.8450.231.15310.402-1.6327.246
120I_DA21:DT125_J0.765-0.311-0.173-7.747-16.646-8.395
121I_DA23:DT123_J-0.7860.0630.679-10.364-8.4682.661
124I_DA26:DT120_J1.1620.120.1734.228-7.7824.704
125I_DA27:DC119_J-1.097-0.191-0.611-8.454-17.4157.452
128I_DA31:DT115_J-0.341-0.7120.224.964-25.31-3.04
129I_DA32:DT114_J-1.044-0.0930.98616.41.4014.186
138I_DA44:DT102_J0.0280.403-0.467-16.235-28.64119.392
141I_DA48:DT98_J0.0840.141-0.62-28.99-13.5240.379
142I_DA49:DT97_J0.936-0.1820.8837.485-5.93-0.134
143I_DA50:DT96_J0.0290.075-0.033-1.679-18.5897.821
147I_DA54:DT92_J-0.1110.070.0-4.49-25.68212.886
148I_DA55:DT91_J-0.251-0.0770.3236.134-30.22510.016
154I_DA62:DT84_J1.677-0.359-2.308-18.213-31.036-18.959
156I_DA65:DT81_J1.4530.1030.81732.909-22.0193.811
161I_DA72:DT74_J0.181-0.063-0.465-16.436-35.2092.017
162I_DA73:DT73_J0.696-0.37-0.087-16.461-18.1842.01
166I_DA77:DT69_J0.451-0.014-0.1265.897-52.9914.342
167I_DA78:DT68_J-0.86-0.418-0.2741.266-6.978-0.76
174I_DA85:DT61_J-0.355-0.652-0.85410.1827.285-5.341
175I_DA86:DT60_J-0.527-0.4390.72815.69-23.63-5.284
179I_DA90:DT56_J-0.292-0.4971.39913.64-9.167-2.523
184I_DA95:DT51_J0.083-0.367-1.178-11.042-20.9518.89
185I_DA96:DT50_J0.3670.473-0.253-6.556-25.81916.576
189I_DA100:DT46_J1.131-0.0520.31124.412-20.786-1.794
190I_DA101:DT45_J-0.4040.1350.37323.892-22.5721.26
192I_DA104:DT42_J-0.0370.249-0.329-18.4163.73114.074
197I_DA111:DT34_J0.3410.316-1.05837.3439.805-26.855
1101I_DA116:DT30_J0.6560.012-0.341-9.1121.9710.766
1106I_DA121:DT25_J-0.4610.1820.2864.735-2.77612.519
1107I_DA122:DT24_J-0.283-0.3641.80810.25111.4047.198
1111I_DA126:DT20_J-1.38-0.301-0.509-26.406-16.881-8.142
1118I_DA134:DT12_J-1.062-0.3220.711-23.376-30.8731.97
1122I_DA140:DT6_J-0.239-0.571-0.2755.767-37.21-3.418
13I_DC3:DG143_J0.527-0.2920.762-11.605-7.0825.663
111I_DC11:DG135_J-0.33-0.4612.136-17.3018.45117.462
139I_DC45:DG101_J-0.1080.3060.52-9.938-32.09213.309
140I_DC47:DG99_J-2.8820.2870.102-23.429-45.5215.539
155I_DC64:DG82_J-0.068-0.2420.2210.812-9.9411.442
158I_DC68:DG78_J0.576-0.321-1.1118.52-35.9254.386
160I_DC70:DG76_J-0.144-0.1840.4-9.447-6.269-6.224
169I_DC80:DG66_J-0.1170.033-0.088-10.1832.578-3.479
191I_DC103:DG43_J-1.0330.415-0.7928.137-15.1437.659
1113I_DC129:DG17_J1.7961.3271.2651.792-40.71840.119
16I_DG6:DC140_J1.3810.5390.71822.079-10.10118.107
17I_DG7:DC139_J0.1860.106-0.0888.043-28.3858.26
114I_DG15:DC131_J0.9170.359-0.5127.7145.56613.334
118I_DG19:DC127_J-1.062-0.8521.8068.825-11.846-2.032
119I_DG20:DC126_J2.3411.661.16914.342-13.03323.816
123I_DG25:DC121_J-0.773-0.0790.361.704-14.2668.677
126I_DG29:DC117_J0.230.757-1.179-5.648-25.78930.265
127I_DG30:DC116_J-0.2790.6960.1623.927-30.75619.559
133I_DG38:DC107_J0.2290.339-1.15427.0682.277-29.68
136I_DG42:DC104_J0.997-0.7921.724-0.06510.7920.103
137I_DG43:DC103_J0.192-0.2360.62-6.926-4.0322.754
145I_DG52:DC94_J-0.232-0.504-0.669-6.546-15.5836.455
146I_DG53:DC93_J0.1050.2730.40618.931-11.39811.67
153I_DG61:5CM85_J-0.732-0.322-1.499-32.375-31.66424.245
157I_DG67:DC79_J0.2050.090.00425.702-27.55812.977
164I_DG75:DC71_J0.2020.0380.2254.2362.284.063
165I_DG76:DC70_J0.4010.2920.05723.262-3.057-4.684
173I_DG84:5CM62_J0.570.247-0.7821.655-20.457.654
177I_DG88:DC58_J0.3140.4340.8429.207-24.8677.938
178I_DG89:DC57_J-0.221-0.0551.65517.154-11.34.181
183I_DG94:5CM52_J-1.327-0.45-0.559-10.423-23.91918.093
187I_DG98:DC48_J0.886-0.001-0.361-3.112-2.771.213
196I_DG110:5CM36_J-1.080.669-0.467-31.816-28.60810.102
199I_DG114:DC32_J0.443-0.866-2.02426.542-30.859-5.143
1100I_DG115:DC31_J-0.266-0.106-0.743.322-28.12111.023
1105I_DG120:5CM26_J-1.3050.9610.223-22.598-23.67332.976
1109I_DG124:DC22_J1.1560.4710.504-1.093-28.11216.91
1110I_DG125:DC21_J2.0680.4410.064-8.681-31.8759.11
1117I_DG133:5CM13_J-0.320.5210.58-5.975-34.27519.652
1120I_DG137:DC9_J-1.2480.0790.2514.733-19.1582.433
1121I_DG138:DC8_J0.2180.211-0.83-9.698-23.91218.395
1124I_DG143:DC3_J0.764-0.068-1.873-18.831-22.554-5.742
12I_DT2:DA144_J0.7750.0010.182-11.545-12.3230.353
15I_DT5:DA141_J-0.723-0.10.943-0.751-7.6551.319
110I_DT10:DA136_J-0.6830.1530.6767.013-18.9166.271
113I_DT13:DA132_J-0.029-0.302-1.604-22.937-12.495-28.15
117I_DT18:DA128_J-0.833-0.671.1883.8422.772-9.861
122I_DT24:DA122_J1.1470.0610.12121.43715.7472.362
130I_DT33:DA113_J0.903-0.3271.8698.06612.76212.713
131I_DT36:DA110_J-0.432-0.1330.77.531-14.3213.847
132I_DT37:DA109_J0.003-0.2090.6183.697-1.0093.857
134I_DT40:DA106_J0.628-0.151.211-12.28-15.201-6.137
135I_DT41:DA105_J0.434-0.610.219-9.565-17.2490.266
144I_DT51:DA95_J-1.861-0.16-0.2825.391-14.76115.809
149I_DT57:DA89_J-0.3910.529-0.79310.899-27.10816.034
150I_DT58:DA88_J2.752-0.651-1.05223.091-34.47817.142
151I_DT59:DA87_J0.184-0.1010.79526.112-43.56116.162
159I_DT69:DA77_J-0.656-0.0560.541-5.705-29.365-1.852
163I_DT74:DA72_J0.2040.778-0.056-13.144-36.03127.321
168I_DT79:DA67_J-0.153-0.3740.781-5.355-17.093-8.195
170I_DT81:DA65_J-0.054-0.0350.9435.9853.7850.577
171I_DT82:DA64_J-1.386-0.1640.192-1.3962.1740.386
176I_DT87:DA59_J-1.110.0120.284.511-9.13413.814
180I_DT91:DA55_J0.22-0.082-0.018-6.808-21.653.006
181I_DT92:DA54_J-0.1040.0430.035-12.679-21.95715.046
186I_DT97:DA49_J0.2810.0620.635-7.373-17.9414.515
188I_DT99:DA47_J1.119-0.465-0.45417.827-23.6996.409
193I_DT105:DA41_J-0.197-0.0560.22517.8656.474-2.237
194I_DT106:DA40_J-0.449-0.349-0.613-17.421-40.621.186
198I_DT113:DA33_J0.5840.909-0.45451.915-5.87414.077
1102I_DT117:DA29_J-1.3970.2160.537-1.167-4.87810.162
1103I_DT118:DA28_J0.515-0.1660.1793.824-18.873-4.792
1108I_DT123:DA23_J0.398-0.1451.1960.61611.0286.061
1112I_DT128:DA18_J-1.4330.410.452-0.611-31.59311.692
1114I_DT130:DA16_J0.3270.092-0.4011.41-33.6556.461
1115I_DT131:DA15_J-1.2530.2320.539-16.777-9.8056.864
1119I_DT136:DA10_J-0.586-0.2680.8437.499-17.7521.891
1123I_DT142:DA4_J0.0650.2210.06415.208-8.46815.972

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.