A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-Sep-2019 number of released structures: 10387
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NDB ID: PD0048  PDB ID: 5CRX 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12C_DA4:DT33_D-0.621-0.0380.273-2.843-5.729-0.627
13C_DA5:DT32_D0.3720.2530.60913.114-4.8327.303
110C_DA12:DT25_D0.23-0.1580.005-2.606-2.774-0.587
112C_DA14:DT23_D0.096-0.318-0.23-13.061-5.286-1.486
115C_DA17:DT20_D1.863-0.4650.06519.179-24.13415.508
117C_DA19:DT18_D-0.4480.481-0.429-6.048-13.0876.197
122C_DA24:DT13_D-0.083-0.0890.1040.188-1.9724.258
124C_DA26:DT11_D0.875-0.2150.125-14.604-10.5612.478
127C_DA29:DT8_D1.026-0.2480.144.586-13.566-3.911
128C_DA30:DT7_D0.134-0.2710.2515.199-12.062-4.087
132C_DA34:DT3_D1.099-0.28-0.641-7.255-5.504-8.227
14C_DC6:DG31_D0.286-0.274-0.22310.947-24.2145.291
17C_DC9:DG28_D-0.41-0.0710.076-8.841-4.95-5.36
114C_DC16:DG21_D-0.4980.292-0.068-1.816-7.917.794
120C_DC22:DG15_D-1.2060.2820.42-2.914-4.43-0.158
125C_DC27:DG10_D0.376-0.0180.478-2.531-3.9123.212
18C_DG10:DC27_D0.242-0.0520.4198.14410.461-4.51
113C_DG15:DC22_D-0.14-0.269-0.324-17.351-7.7491.752
119C_DG21:DC16_D0.6540.3850.244-8.271-13.6647.496
126C_DG28:DC9_D0.007-0.125-0.0693.993-4.434-7.121
129C_DG31:DC6_D-0.697-0.222-0.249-14.507-17.429-0.272
11C_DT3:DA34_D-0.411-0.0410.1591.479-3.165-5.155
15C_DT7:DA30_D-0.856-0.229-0.0572.5-17.342-0.124
16C_DT8:DA29_D-1.0490.215-0.372-1.218-16.8421.043
19C_DT11:DA26_D0.1710.1650.1169.476-10.8144.937
111C_DT13:DA24_D0.228-0.3730.228-2.812.911-3.313
116C_DT18:DA19_D0.868-0.311-0.5139.874-0.006-4.354
118C_DT20:DA17_D-0.0120.143-0.06826.898-8.88513.212
121C_DT23:DA14_D-0.636-0.021-0.1727.627-2.437-1.843
123C_DT25:DA12_D0.184-0.1450.152.642-8.96-0.802
130C_DT32:DA5_D-0.220.4120.315-10.608-8.683-1.328
131C_DT33:DA4_D-0.548-0.046-0.311-1.344-13.7834.227

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.