A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 5D0B  PDB ID: 5D0B 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13F_A29:U41_F0.096-0.035-0.146-6.743-12.9232.831
15F_A31:U39_F-0.001-0.0540.032-4.813-16.2714.721
12F_C28:G42_F-0.179-0.295-0.2313.411-11.3011.818
16F_C32:A38_F2.236-0.3740.476-9.745-18.7483.767
11F_G27:C43_F-0.859-0.414-0.1011.749-8.742-9.37
14F_G30:C40_F-0.214-0.0380.036-4.175-5.781.179
17F_U33:A37_F-0.2980.167-0.194-11.651-9.5331.351

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.