5D0B: Base Pair Morphology Step Parameters

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As of 19-Jan-2022 number of released structures: 11891

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NDB ID: 5D0B PDB ID: 5D0B

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	FF_A29G30:C40U41_FF	-0.142	-1.836	3.175	-2.568	3.394	29.425	-4.249	-0.231	2.951	6.638	5.023	29.724
1	5	FF_A31C32:A38U39_FF	0.221	-1.025	3.331	0.556	14.009	43.443	-2.526	-0.237	2.888	18.365	-0.728	45.545
1	2	FF_C28A29:U41G42_FF	0.427	-1.709	3.47	0.376	11.479	32.073	-4.71	-0.672	2.72	19.993	-0.655	34.017
1	6	FF_C32U33:A37A38_FF	0.03	-0.948	2.983	12.709	11.91	21.731	-4.413	2.541	1.955	26.735	-28.527	27.784
1	1	FF_G27C28:G42C43_FF	0.473	-1.859	3.243	-0.503	5.831	36.956	-3.627	-0.801	2.92	9.128	0.788	37.401
1	4	FF_G30A31:U39C40_FF	0.038	-1.564	3.271	1.417	5.908	30.555	-3.991	0.189	2.924	11.073	-2.656	31.139

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.