A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 5D0B  PDB ID: 5D0B 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13FF_A29G30:C40U41_FF-0.142-1.8363.175-2.5683.39429.425-4.249-0.2312.9516.6385.02329.724
15FF_A31C32:A38U39_FF0.221-1.0253.3310.55614.00943.443-2.526-0.2372.88818.365-0.72845.545
12FF_C28A29:U41G42_FF0.427-1.7093.470.37611.47932.073-4.71-0.6722.7219.993-0.65534.017
16FF_C32U33:A37A38_FF0.03-0.9482.98312.70911.9121.731-4.4132.5411.95526.735-28.52727.784
11FF_G27C28:G42C43_FF0.473-1.8593.243-0.5035.83136.956-3.627-0.8012.929.1280.78837.401
14FF_G30A31:U39C40_FF0.038-1.5643.2711.4175.90830.555-3.9910.1892.92411.073-2.65631.139

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.