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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
5D0B
PDB ID:
5D0B
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
3
FF_A29G30:C40U41_FF
-0.142
-1.836
3.175
-2.568
3.394
29.425
-4.249
-0.231
2.951
6.638
5.023
29.724
1
5
FF_A31C32:A38U39_FF
0.221
-1.025
3.331
0.556
14.009
43.443
-2.526
-0.237
2.888
18.365
-0.728
45.545
1
2
FF_C28A29:U41G42_FF
0.427
-1.709
3.47
0.376
11.479
32.073
-4.71
-0.672
2.72
19.993
-0.655
34.017
1
6
FF_C32U33:A37A38_FF
0.03
-0.948
2.983
12.709
11.91
21.731
-4.413
2.541
1.955
26.735
-28.527
27.784
1
1
FF_G27C28:G42C43_FF
0.473
-1.859
3.243
-0.503
5.831
36.956
-3.627
-0.801
2.92
9.128
0.788
37.401
1
4
FF_G30A31:U39C40_FF
0.038
-1.564
3.271
1.417
5.908
30.555
-3.991
0.189
2.924
11.073
-2.656
31.139
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.