A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 5-Aug-2020 number of released structures: 10886
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NDB ID: 5DFF  PDB ID: 5DFF 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13D_DA4:DT8_V0.251-0.0650.0410.68-13.539-1.725
17D_DA8:DT4_V-0.02-0.1530.168-1.875-11.8412.513
11D_DC2:DG10_V0.234-0.0990.061-3.5689.253-0.3
14D_DC5:DG7_V0.075-0.0910.1760.207-6.94-0.028
19D_DC10:DG2_V0.301-0.2380.234-7.068-13.258-0.061
110D_DC11:DG1_V0.195-0.393-0.92517.0971.6844.336
12D_DG3:DC9_V-0.199-0.1680.1395.045-13.788-2.458
15D_DG6:DC6_V-0.152-0.1730.1496.664-6.501-2.611
16D_DG7:DC5_V-0.233-0.235-0.0691.382-11.143-1.67
18D_DT9:DA3_V-0.031-0.1710.009-3.753-14.5131.814
115P_DA5:DT17_V0.148-0.23-0.162-3.434-13.4411.7
112P_DC2:DG20_V0.155-0.1670.494-1.89-5.556-2.048
118P_DC8:DG14_V0.154-0.1440.054-2.625-0.959-1.376
120P_DC10:DG12_V0.12-0.1250.326-3.257-11.8861.899
111P_DG1:DC21_V-0.221-0.068-0.191-12.705-1.7792.673
114P_DG4:DC18_V-0.13-0.129-0.0248.339-12.7341.014
117P_DG7:DC15_V-0.196-0.114-0.197-10.009-5.551-0.385
119P_DG9:DC13_V-0.137-0.10.44612.467-11.6390.353
113P_DT3:DA19_V-0.003-0.0590.0898.873-9.384-2.921
116P_DT6:DA16_V0.025-0.102-0.1221.158-10.3441.569

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.