A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 5-Aug-2020 number of released structures: 10886
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NDB ID: 5DFF  PDB ID: 5DFF 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13DD_DA4DC5:DG7DT8_VV0.671-0.6553.294-0.077-0.40130.816-1.154-1.2773.3-0.7540.14530.818
17DD_DA8DT9:DA3DT4_VV-0.508-0.6353.2741.2660.63832.698-1.2361.1183.241.133-2.24832.728
11DD_DC2DG3:DC9DG10_VV-0.5271.5483.4170.04-6.19639.4962.9840.7763.148-9.1-0.05939.96
14DD_DC5DG6:DC6DG7_VV0.0310.4593.1562.0436.18235.63-0.1110.2313.18610.0-3.30536.201
19DD_DC10DC11:DG1DG2_VV1.4391.7372.80611.025-1.97934.8823.016-0.9093.009-3.201-17.83136.583
12DD_DG3DA4:DT8DC9_VV-0.145-0.0243.369-0.5451.65738.811-0.2440.153.3662.4930.8238.849
15DD_DG6DG7:DC5DC6_VV-0.141-0.5853.4370.0019.16130.024-2.8530.2623.12717.188-0.00331.36
16DD_DG7DA8:DT4DC5_VV0.021-0.3333.284-3.0481.89238.722-0.731-0.4033.2542.8464.58538.881
18DD_DT9DC10:DG2DA3_VV-0.216-0.173.368-2.0531.40537.068-0.460.0563.3662.2073.22437.148
114PP_DA5DT6:DA16DT17_VV-0.09-0.5943.144-0.3270.71131.519-1.2210.1073.1311.3080.60231.529
111PP_DC2DT3:DA19DG20_VV-0.411-0.43.0322.7511.32828.723-1.0731.3852.962.667-5.52628.882
117PP_DC8DG9:DC13DG14_VV0.409-0.3632.938-3.45111.62729.427-2.525-1.2992.55321.7616.45931.777
110PP_DG1DC2:DG20DC21_VV-0.666-0.353.093-6.7334.79628.172-1.684-0.0793.0679.59513.46929.336
113PP_DG4DA5:DT17DC18_VV-0.486-0.1583.465-3.174.78940.595-0.7810.3263.4526.864.54240.982
116PP_DG7DC8:DG14DC15_VV0.141-0.393.131-1.4444.76130.03-1.645-0.5433.0259.1092.76430.43
118PP_DG9DC10:DG12DC13_VV-0.195-1.0093.629-0.3223.12436.174-2.0990.2633.5345.0190.51736.305
112PP_DT3DG4:DC18DA19_VV0.610.2583.3262.42811.63332.174-1.466-0.6393.25820.151-4.20634.244
115PP_DT6DG7:DC15DA16_VV0.227-0.3053.5151.0229.79637.872-1.712-0.2083.34214.79-1.54339.086

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.