A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 5DNM  PDB ID: 5DNM 


Base Pair Hydrogen Bonding Classification

CSV Format

Model NumberPair NumberPair NameLeontis / Westhof ClassificationSaenger Classification
11I_DA-72:DT72_J120
14I_DA-69:DT69_J120
15I_DA-68:DT68_J120
17I_DA-66:DT66_J120
111I_DA-62:DT62_J120
117I_DA-56:DT56_J120
119I_DA-54:DT54_J120
121I_DA-52:DT52_J120
124I_DA-49:DT49_J120
127I_DA-46:DT46_J120
128I_DA-45:DT45_J120
129I_DA-44:DT44_J120
130I_DA-43:DT43_J120
135I_DA-38:DT38_J120
140I_DA-32:DT32_J120
141I_DA-31:DT31_J120
142I_DA-30:DT30_J120
150I_DA-22:DT22_J120
153I_DA-19:DT19_J120
154I_DA-18:DT18_J120
155I_DA-17:DT17_J120
156I_DA-16:DT16_J120
159I_DA-12:DT12_J120
165I_DA-6:DT6_J120
170I_DA-1:DT1_J120
171I_DA0:DT0_J120
174I_DA3:DT-3_J120
179I_DA8:DT-8_J120
180I_DA9:DT-9_J120
182I_DA11:DT-11_J120
192I_DA25:DT-25_J120
195I_DA28:DT-28_J120
1102I_DA35:DT-35_J120
1103I_DA36:DT-36_J120
1104I_DA37:DT-37_J120
1106I_DA39:DT-39_J120
1108I_DA41:DT-41_J120
1116I_DA50:DC-51_J00
1123I_DA59:DT-59_J00
1129I_DA65:DT-65_J120
1131I_DA67:DT-67_J120
1135I_DA71:DT-71_J120
13I_DC-70:DG70_J10
19I_DC-64:DG64_J119
110I_DC-63:DG63_J119
112I_DC-61:DG61_J10
113I_DC-60:DG60_J10
116I_DC-57:DG57_J119
122I_DC-51:DG51_J10
125I_DC-48:DG48_J119
126I_DC-47:DG47_J10
143I_DC-29:DG29_J10
146I_DC-26:DG26_J119
148I_DC-24:DG24_J119
149I_DC-23:DG23_J119
152I_DC-20:DG20_J119
158I_DC-13:DG13_J00
164I_DC-7:DG7_J119
167I_DC-4:DG4_J119
173I_DC2:DG-2_J119
176I_DC5:DG-5_J119
181I_DC10:DG-10_J119
185I_DC14:DG-14_J119
186I_DC15:DG-15_J10
194I_DC27:DG-27_J10
1100I_DC33:DG-33_J119
1101I_DC34:DG-34_J119
1107I_DC40:DG-40_J119
1109I_DC42:DG-42_J119
1119I_DC55:DG-55_J119
1122I_DC58:DG-58_J119
115I_DG-58:DC58_J119
118I_DG-55:DC55_J119
131I_DG-42:DC42_J10
133I_DG-40:DC40_J119
139I_DG-33:DC34_J00
145I_DG-27:DC27_J119
157I_DG-15:DC15_J10
161I_DG-10:DC10_J119
166I_DG-5:DC5_J119
169I_DG-2:DC2_J119
175I_DG4:DC-4_J119
178I_DG7:DC-7_J119
184I_DG13:DC-13_J119
190I_DG23:DC-23_J10
191I_DG24:DC-24_J119
193I_DG26:DC-26_J119
196I_DG29:DC-29_J10
1114I_DG47:DC-47_J00
1115I_DG48:DC-48_J00
1117I_DG51:DA-52_J18
1121I_DG57:DC-57_J119
1124I_DG60:DC-60_J119
1125I_DG61:DC-61_J119
1127I_DG63:DC-63_J119
1128I_DG64:DC-64_J119
1134I_DG70:DC-70_J119
12I_DT-71:DA71_J120
16I_DT-67:DA67_J120
18I_DT-65:DA65_J120
114I_DT-59:DA59_J00
120I_DT-53:DA53_J00
123I_DT-50:DA50_J120
132I_DT-41:DA41_J120
134I_DT-39:DA39_J120
136I_DT-37:DA37_J120
137I_DT-36:DA36_J120
138I_DT-35:DA35_J120
144I_DT-28:DA28_J120
147I_DT-25:DA25_J120
151I_DT-21:DA21_J120
160I_DT-11:DA11_J120
162I_DT-9:DA9_J120
163I_DT-8:DA8_J120
168I_DT-3:DA3_J120
172I_DT1:DA-1_J120
177I_DT6:DA-6_J120
183I_DT12:DA-12_J120
187I_DT16:DA-16_J120
188I_DT18:DA-18_J120
189I_DT19:DA-19_J120
197I_DT30:DA-30_J120
198I_DT31:DA-31_J120
199I_DT32:DA-32_J120
1105I_DT38:DA-38_J00
1110I_DT43:DA-43_J120
1111I_DT44:DA-44_J120
1112I_DT45:DA-45_J120
1113I_DT46:DA-46_J00
1118I_DT54:DA-54_J120
1120I_DT56:DA-56_J120
1126I_DT62:DA-62_J120
1130I_DT66:DA-66_J120
1132I_DT68:DA-68_J120
1133I_DT69:DA-69_J120
1136I_DT72:DA-72_J120

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)