A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 30-Nov-2022 number of released structures: 12490
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NDB ID: 5E63  PDB ID: 5E63 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14B_DA4:DT22_E0.088-0.11-0.209-3.1553.0524.754
16B_DA6:DT20_E0.0-0.2790.24812.949-6.6491.895
111B_DA11:DT15_D0.369-0.3020.4746.24-18.2-2.523
113B_DA13:DT13_D-0.051-0.3330.0360.759-29.761-4.856
114B_DA14:DT12_D0.075-0.310.239-7.597-21.093-1.717
11B_DC1:DG25_E0.0910.060.121-15.446-4.887-0.589
15B_DC5:DG21_E-0.003-0.149-0.048.226-11.422-3.696
17B_DC7:DG19_E0.424-0.137-0.20210.949-13.1690.722
18B_DC8:DG18_E0.4090.002-0.075-2.851-4.9585.819
12B_DG2:DC24_E-0.014-0.036-0.185-16.986-10.2341.265
110B_DG10:DC16_E-0.083-0.006-0.4030.653-12.4731.081
13B_DT3:DA23_E0.034-0.1710.074-3.701-6.550.155
19B_DT9:DA17_E0.284-0.129-0.1479.2740.8329.712
112B_DT12:DA14_D0.305-0.131-0.12911.961-18.5984.339
118C_DA18:DT8_D0.201-0.212-0.438-8.066-2.8092.352
121C_DA21:DT5_D-0.011-0.0570.3824.107-3.235-0.532
123C_DA23:DT3_D-0.016-0.2910.1926.817-15.6644.707
124C_DC24:DG2_D-0.2460.097-0.6296.978-18.8645.997
125C_DC25:DG1_D0.6130.084-0.69718.867-16.762.296
116C_DG16:DC10_D-0.359-0.192-0.1084.5065.954-0.199
117C_DG17:DC9_D-0.335-0.073-0.27-8.567-4.676-2.154
119C_DG19:DC7_D-0.543-0.1820.03411.091-0.5533.647
120C_DG20:DC6_D-0.418-0.2250.0956.193-6.409-2.246
115C_DT15:DA11_D-0.361-0.028-0.089-6.148-4.899-9.824
122C_DT22:DA4_D0.161-0.1460.482-0.688-3.003-1.209

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.