A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 30-Nov-2022 number of released structures: 12490
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NDB ID: 5E63  PDB ID: 5E63 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14BB_DA4DC5:DG21DT22_EE-1.1460.523.148-1.6993.01426.850.362.0263.2516.4573.6427.068
16BB_DA6DC7:DG19DT20_EE0.546-1.0713.3831.452.10633.893-2.179-0.6963.3323.606-2.48333.987
111BB_DA11DT12:DA14DT15_DD-0.254-0.5883.2164.76-5.61328.0880.0561.5513.186-11.322-9.629.018
113BB_DA13DA14:DT12DT13_DD0.5760.0253.341-1.95-2.87536.9910.429-1.1693.296-4.523.06537.148
114BC_DA14DT15:DA11DT12_DD-0.561-0.1373.1562.461-2.15336.5840.0651.2133.116-3.421-3.9136.724
11BB_DC1DG2:DC24DG25_EE0.6710.13.3752.617.03633.284-0.995-0.7123.36712.093-4.48734.096
15BB_DC5DA6:DT20DG21_EE0.6870.1283.312-1.4822.15141.669-0.048-1.1213.2893.0212.08141.747
17BB_DC7DC8:DG18DG19_EE-0.189-1.7263.561-1.6328.14627.218-5.4130.0042.93716.8193.3728.435
18BB_DC8DT9:DA17DG18_EE-0.029-0.3733.1250.7480.93530.278-0.8930.23.1111.789-1.43230.301
12BB_DG2DT3:DA23DC24_EE-0.612-0.4042.982-1.063.37328.752-1.4851.0122.9366.7612.12528.964
110BB_DG10DA11:DT15DC16_DE-0.623-0.3283.083-9.2690.27239.427-0.504-0.1013.1420.39713.51340.46
13BB_DT3DA4:DT22DA23_EE0.861.0943.3884.3080.76442.1131.433-0.7283.4741.059-5.97542.329
19BB_DT9DG10:DC16DA17_EE-1.615-0.543.699-0.4991.67932.352-1.3022.7953.6913.0110.89432.399
112BB_DT12DA13:DT13DA14_DD-0.3742.6033.631.791-20.72449.6944.1440.5232.429-23.509-2.03253.616
118CC_DA18DG19:DC7DT8_DD0.108-0.3912.918-2.6342.55428.778-1.278-0.7292.8535.1125.27229.006
121CC_DA21DT22:DA4DT5_DD0.137-1.173.628-2.225-7.27931.478-0.623-0.6963.779-13.1784.02932.363
123CC_DA23DC24:DG2DT3_DD-0.092-0.463.1865.462-1.40631.122-0.5911.1543.142-2.594-10.07631.616
124CC_DC24DC25:DG1DG2_DD-0.0190.8533.0722.7587.51138.2660.4040.3493.16911.307-4.15339.063
116CC_DG16DG17:DC9DC10_DD0.677-1.7063.6773.166.22328.668-4.787-0.6023.29512.338-6.26629.488
117CC_DG17DA18:DT8DC9_DD-0.271-0.993.4682.7711.58733.605-1.9760.9393.3862.738-4.77933.752
119CC_DG19DG20:DC6DC7_DD-0.783-0.7633.37-1.7314.94134.23-2.0581.0453.2668.3342.91934.617
120CC_DG20DA21:DT5DC6_DD0.237-0.9183.32-2.591-8.47537.972-0.306-0.6833.417-12.8123.91738.955
115CC_DT15DG16:DC10DA11_DD2.3540.0443.1783.4890.43832.2250.001-3.5973.4080.786-6.26332.411
122CC_DT22DA23:DT3DA4_DD0.133-0.5352.9712.404-0.2536.008-0.8320.0952.977-0.403-3.88436.086

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.