A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
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NDB ID: 5EMQ  PDB ID: 5EMQ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12C_DA3:DT18_D-0.4910.0780.2866.387-10.455.607
14C_DA5:DT16_D0.09-0.221-0.007-3.054-17.0234.32
15C_DA6:DT15_D0.508-0.1270.334-5.545-11.0068.118
17C_DA8:DT13_D0.385-0.0050.2430.007-10.8693.721
110C_DA11:DT10_D0.2920.0250.048-6.115-12.3338.663
11C_DC2:DG19_D0.276-0.1860.1925.883-1.2173.118
16C_DC7:DG14_D0.032-0.1760.179-1.108-11.964-0.2
115C_DC16:DG5_D-0.073-0.2630.224-9.397-11.9661.187
13C_DG4:DC17_D-0.22-0.1360.2897.251-12.6221.033
19C_DG10:DC11_D-0.598-0.2660.882-3.12-25.02214.907
112C_DG13:DC8_D-0.364-0.1270.3214.34-8.1513.792
117C_DG18:DC3_D-0.223-0.13-0.31-14.185-7.692-2.972
18C_DT9:DA12_D0.064-0.097-0.0083.198-13.713.436
111C_DT12:DA9_D0.143-0.2730.225-2.858-11.5324.311
113C_DT14:DA7_D-0.055-0.2270.1813.385-13.3252.592
114C_DT15:DA6_D0.18-0.346-0.0142.014-13.1541.496
116C_DT17:DA4_D0.117-0.2160.561-12.341-8.3344.121

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.