A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 9-Oct-2019 number of released structures: 10416
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NDB ID: 5F8I  PDB ID: 5F8I 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12B_C602:G700_C0.339-0.3220.0913.11-16.455-0.02
14B_C604:G698_C0.153-0.1070.1680.688-10.019-0.053
16B_C606:G696_C0.426-0.1650.15411.499-13.818-0.557
18B_C608:G694_C0.733-0.0670.41211.533-11.948-0.176
19B_G609:C693_C0.403-0.4590.1930.986-17.302-2.708
11B_U601:A701_C-0.629-0.0320.338-9.692-14.1437.994
13B_U603:A699_C-0.229-0.1450.52-3.609-10.999-1.709
15B_U605:A697_C0.458-0.1960.2355.0-9.232.348
17B_U607:A695_C-0.163-0.1290.0998.234-10.3563.079
110B_U610:A692_C0.211-0.5750.2110.075-16.778-6.417

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.