A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 16-Oct-2019 number of released structures: 10422
Search for released structures

NDB ID: 5F8I  PDB ID: 5F8I 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12BB_C602U603:A699G700_CC-0.192-1.3983.437-5.3997.68731.396-3.816-0.5973.0113.8229.70932.738
14BB_C604U605:A697G698_CC0.262-1.1043.158-0.4756.32332.708-2.91-0.5312.89611.0970.83433.3
16BB_C606U607:A695G696_CC-0.209-1.943.191-2.7796.80326.395-5.625-0.1832.62514.5435.94227.381
18BB_C608G609:C693G694_CC-0.293-2.1163.4551.5092.82827.602-5.10.983.2065.903-3.14927.784
19BB_G609U610:A692C693_CC-0.132-1.1913.4043.332-0.56435.417-1.8630.7233.396-0.924-5.46135.573
11BB_U601C602:G700A701_CC0.556-1.1382.9461.74513.17531.499-3.695-0.7142.32523.028-3.05134.123
13BB_U603C604:G698A699_CC-0.212-1.1893.0772.7663.56432.767-2.6430.8012.9086.28-4.87533.068
15BB_U605C606:G696A697_CC-0.282-1.623.182-1.167-0.81129.576-3.0020.313.233-1.5882.28429.609
17BB_U607C608:G694A695_CC-0.193-1.7523.08-4.6225.10939.236-3.112-0.2052.8437.5376.81939.813

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.