A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 5F99  PDB ID: 5F99 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA-73:DT73_J-0.409-0.0710.019-16.2076.461.994
17I_DA-67:DT67_J0.1740.1760.37817.676-8.1892.484
18I_DA-66:DT66_J1.2930.4580.19219.349-24.5565.636
110I_DA-64:DT64_J0.434-0.203-0.91210.994-21.7734.953
116I_DA-58:DT58_J0.294-0.0410.61120.433-28.407-11.091
117I_DA-57:DT57_J0.8980.1760.4997.261-31.149-4.885
119I_DA-55:DT55_J0.1220.1690.6942.246-11.45812.673
122I_DA-51:DT51_J0.811-0.170.53415.884-0.752-11.748
150I_DA-23:DT23_J1.1270.162-0.893-3.553-16.495-5.781
166I_DA-5:DT5_J0.571-0.5231.23110.222-7.995-1.804
170I_DA-1:DT1_J-0.988-0.2090.921-5.1812.464-4.622
177I_DA6:DT-6_J-0.327-0.2861.4297.665-9.224-5.215
184I_DA13:DT-13_J-0.2140.0540.53515.617-5.551-3.635
186I_DA15:DT-15_J0.0080.1050.1730.537-30.971-3.497
199I_DA28:DT-28_J-1.526-0.2260.1144.383-1.02113.579
1101I_DA30:DT-30_J-0.5690.20.13413.384-15.4864.444
1110I_DA39:DT-39_J-0.1210.086-0.27315.529-18.484-1.13
1116I_DA45:DT-45_J-0.7310.1441.354-1.261-6.5792.995
1126I_DA55:DT-55_J0.5990.4130.79431.53-12.20213.803
1134I_DA63:DT-63_J-0.520.214-0.44-2.184-4.638-9.459
1136I_DA65:DT-65_J0.588-0.160.41723.004-14.7840.464
1143I_DA72:DT-72_J-1.259-0.414-0.057-24.219-11.367-12.341
13I_DC-71:DG71_J-0.170.0350.549-6.778-15.4167.534
16I_DC-68:DG68_J-1.0660.095-0.05616.913-13.066-6.778
19I_DC-65:DG65_J0.2740.29-0.71728.013-5.3525.646
113I_DC-61:DG61_J-0.6180.444-0.4128.953-16.136-2.122
114I_DC-60:DG60_J0.028-0.0570.7173.4715.1246.668
118I_DC-56:DG56_J0.774-0.0780.543-4.08-11.606-1.778
121I_DC-52:DG52_J-0.5210.128-0.8121.478-12.9546.365
123I_DC-50:DG50_J-0.4220.040.30211.379-9.363-5.279
124I_DC-49:DG49_J-0.43-0.1110.615-0.677-2.608-5.228
126I_DC-47:DG47_J0.557-0.0320.578-6.117-6.7061.827
141I_DC-32:DG32_J-0.120.3230.02515.545-4.420.737
146I_DC-27:DG27_J-0.4550.08-0.315-2.829-1.6529.601
148I_DC-25:DG25_J0.729-0.007-0.4710.20413.6198.643
149I_DC-24:DG24_J0.0830.373-0.50914.063-10.6240.372
152I_DC-21:DG21_J-0.1490.191-1.10527.179-0.565-10.779
153I_DC-20:DG20_J0.3550.077-1.21621.5432.7887.995
154I_DC-19:DG19_J1.4230.356-0.79312.4112.8713.686
156I_DC-16:DG16_J-0.87-0.28-1.60135.467-10.592-7.468
158I_DC-14:DG13_J1.1-0.057-0.681-12.90915.866-29.881
160I_DC-11:DG11_J-0.698-0.2960.508-3.2852.828-4.923
162I_DC-9:DG9_J0.554-0.193-1.56828.881-33.1975.991
165I_DC-6:DG6_J0.291-0.10.08324.829-42.193.469
167I_DC-4:DG4_J-1.260.5850.7734.179-8.722-1.855
172I_DC1:DG-1_J0.264-0.0050.348-7.726-13.955-3.297
173I_DC2:DG-2_J-1.094-0.130.877-19.3520.828-1.2
176I_DC5:DG-5_J0.3740.44-0.28716.081-15.4589.664
178I_DC7:DG-7_J-0.5150.3560.3086.526-0.135.894
182I_DC11:DG-11_J-0.796-0.1870.358-2.692-2.1621.026
183I_DC12:DG-12_J0.1260.041-0.0222.6451.4083.988
191I_DC20:DG-20_J-0.114-0.184-0.2594.388-12.974.377
192I_DC21:DG-21_J0.242-0.498-0.4383.65-5.745-4.066
193I_DC22:DG-22_J-0.036-0.206-0.5863.659-0.3868.922
194I_DC23:DG-23_J-0.231-0.0810.608-7.847-3.513-0.553
195I_DC24:DG-24_J-0.450.0450.681-2.421-5.3936.617
196I_DC25:DG-25_J0.238-0.3980.367-1.5073.49-2.232
198I_DC27:DG-27_J0.574-0.159-0.1111.568-11.4664.943
1102I_DC31:DG-31_J0.306-0.070.1118.868-11.08-0.221
1103I_DC32:DG-32_J-0.209-0.4690.025.385-13.910.558
1104I_DC33:DG-33_J-0.8310.2760.365-1.374-6.085-5.405
1105I_DC34:DG-34_J0.173-0.2321.284-11.4211.5333.699
1108I_DC37:DG-37_J-0.49-0.0481.45-7.109-10.505-4.668
1111I_DC40:DG-40_J-0.5980.111-1.88433.534-20.259-6.913
1112I_DC41:DG-41_J-0.512-0.637-0.96810.028-25.2695.49
1113I_DC42:DG-42_J-0.4030.0331.102-0.7175.1073.574
1115I_DC44:DG-44_J0.114-0.0581.367-12.445-3.2542.528
1120I_DC49:DG-49_J0.5390.0890.409-0.727-22.01611.108
1123I_DC52:DG-52_J0.580.0010.19-0.141-9.9641.786
1124I_DC53:DG-53_J0.2790.961-0.67521.037-9.5522.243
1127I_DC56:DG-56_J-0.1870.1880.38414.64-19.931-12.149
1130I_DC59:DG-59_J0.9450.6320.035-0.621-11.5399.245
1133I_DC62:DG-62_J-0.543-0.0950.3027.364-1.715-5.486
1135I_DC64:DG-64_J0.301-0.266-0.6421.29-6.85-14.076
15I_DG-69:DC69_J-0.2950.103-0.418-7.45-10.87410.91
111I_DG-63:DC63_J0.062-0.502-0.886-4.726-3.734-5.376
129I_DG-44:DC44_J-0.8420.3840.2821.87-2.2597.985
131I_DG-42:DC42_J-0.242-0.4590.85416.3580.069-4.894
133I_DG-40:DC40_J0.916-0.176-0.56-7.546-2.991-9.072
137I_DG-36:DC36_J-0.577-0.1950.041-2.028-1.314.048
139I_DG-34:DC34_J-0.4830.2561.16920.9360.1485.993
143I_DG-30:DC30_J1.044-0.057-0.634-20.322-9.8268.161
147I_DG-26:DC26_J0.003-0.1550.688-12.492-31.852-11.442
155I_DG-18:DC18_J-0.8760.128-0.461-10.274.713-1.722
159I_DG-12:DC12_J-1.217-0.29-0.511-12.876-18.26810.551
163I_DG-8:DC8_J0.4030.0390.81811.44-0.7850.482
185I_DG14:DC-14_J0.033-0.1280.11610.857-10.466-1.885
187I_DG16:DC-16_J0.028-0.134-0.2112.749-0.458-6.566
188I_DG17:DC-17_J-0.4930.1720.4347.836-7.829-1.531
189I_DG18:DC-18_J0.1360.044-0.005-5.141-6.8422.028
197I_DG26:DC-26_J0.478-0.1620.0472.01-13.270.423
1100I_DG29:DC-29_J-0.4830.414-0.2519.177-10.5021.789
1106I_DG35:DC-35_J-0.055-0.1091.7481.51-24.095-6.904
1107I_DG36:DC-36_J-1.437-0.5530.756-6.9921.425-11.123
1109I_DG38:DC-38_J-1.0810.1541.08425.1350.2615.157
1117I_DG46:DC-46_J-0.3020.1481.1422.802-17.7638.295
1118I_DG47:DC-47_J0.9130.0281.81411.104-18.2392.044
1121I_DG50:DC-50_J0.7060.41-0.074-21.186-26.4490.644
1122I_DG51:DC-51_J-0.145-0.3441.47910.97-6.276-4.858
1125I_DG54:DC-54_J0.262-0.1960.45718.811-18.8794.969
1129I_DG58:DC-58_J0.4310.3460.414-19.372-29.0050.194
1131I_DG60:DC-60_J-0.7840.1710.9838.92-6.5716.353
1132I_DG61:DC-61_J0.0840.1160.4496.047-24.9978.368
1137I_DG66:DC-66_J0.741-0.2771.02311.015-8.6-1.374
1142I_DG71:DC-71_J-0.479-0.510.555-19.5897.302-2.468
12I_DT-72:DA72_J-0.5770.2580.149-0.457-15.483-0.963
14I_DT-70:DA70_J-0.1540.212-0.2246.943-15.5446.918
112I_DT-62:DA62_J0.803-0.327-0.2286.639-3.717-11.657
115I_DT-59:DA59_J0.130.3790.7717.146-6.389-15.862
120I_DT-53:DA53_J-0.545-0.341-0.57212.773-24.53714.818
125I_DT-48:DA48_J-0.7260.073-0.124-4.061-15.805-9.37
127I_DT-46:DA46_J-0.9360.190.298-15.286-27.702-9.006
128I_DT-45:DA45_J0.498-0.022-0.303-15.884-37.317.624
130I_DT-43:DA43_J0.3620.2960.17813.565-8.836-7.929
132I_DT-41:DA41_J1.034-0.298-0.82219.34-4.914-11.197
134I_DT-39:DA39_J-0.2090.1471.0750.092-1.115-0.162
135I_DT-38:DA38_J0.183-0.0490.731-8.3813.721.25
136I_DT-37:DA37_J-1.1590.0610.418-9.195-7.834-15.012
138I_DT-35:DA35_J1.1950.19-0.29616.799-26.283-7.091
140I_DT-33:DA33_J-0.817-0.101-0.10810.716-14.6412.67
142I_DT-31:DA31_J0.126-0.301-0.3678.462-17.0635.597
144I_DT-29:DA29_J-0.1740.1890.837-6.559.7061.055
145I_DT-28:DA28_J-0.9410.274-0.433.642-24.8276.654
151I_DT-22:DA22_J1.01-0.25-0.76123.664-7.7510.204
157I_DT-15:DA15_J0.0930.0320.7763.596-36.519-3.131
161I_DT-10:DA10_J-1.04-0.264-0.2377.447-13.554-2.969
164I_DT-7:DA7_J0.587-0.052-0.79920.8483.517-14.121
168I_DT-3:DA3_J-0.2520.260.8955.469-2.8370.836
169I_DT-2:DA2_J0.318-0.3940.314.611-14.582-1.528
171I_DT0:DA0_J0.17-0.3621.177-13.575-6.4753.006
174I_DT3:DA-3_J-0.780.145-0.064-5.911-20.739-5.277
175I_DT4:DA-4_J-0.6810.23-0.95510.232-26.143-0.613
179I_DT8:DA-8_J-0.1240.0850.665-5.911-9.505-5.347
180I_DT9:DA-9_J0.164-0.225-0.1580.465-13.8013.168
181I_DT10:DA-10_J-0.6110.0480.042-3.447-11.8375.288
190I_DT19:DA-19_J-0.308-0.121-0.1649.703-19.6981.255
1114I_DT43:DA-43_J-0.7-0.2651.167-11.293-4.297-8.309
1119I_DT48:DA-48_J-0.3260.5230.893-0.178-15.0397.787
1128I_DT57:DA-57_J1.0450.028-0.13211.753-16.653-9.635
1138I_DT67:DA-67_J0.0820.1180.14913.949-14.975-13.794
1139I_DT68:DA-68_J0.544-0.6920.1443.01-16.553-1.211
1140I_DT69:DA-69_J-0.087-0.4320.4357.4543.045-3.302
1141I_DT70:DA-70_J-1.243-0.253-0.18727.39612.315-5.652
1144I_DT73:DA-73_J-0.125-0.3540.498-27.528-4.296-9.2

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.