A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 5F99  PDB ID: 5F99 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11II_DA-73DT-72:DA72DT73_JJ-0.876-0.4163.034-0.772-3.26736.57-0.2431.2923.075-5.1931.22836.718
17II_DA-67DA-66:DT66DT67_JJ0.1340.0693.4186.4853.81238.293-0.3810.6223.3865.744-9.77138.997
18II_DA-66DC-65:DG65DT66_JJ0.659-0.3443.1714.013-2.98933.933-0.121-0.4973.243-5.088-6.8334.29
110II_DA-64DG-63:DC63DT64_JJ-0.802-0.2943.675-6.70814.49329.409-3.2410.1323.28126.25112.1533.381
116II_DA-58DA-57:DT57DT58_JJ0.042-0.4483.7575.0412.10238.367-0.9710.6443.7043.179-7.62338.739
117II_DA-57DC-56:DG56DT57_JJ0.3750.2433.545-5.22-1.32237.2380.561-1.3123.453-2.0578.12237.612
119II_DA-55DT-53:DA53DT55_JJ-0.7431.3335.7639.2777.46968.8260.6911.245.7376.558-8.14569.724
122II_DA-51DC-50:DG50DT51_JJ0.212-1.2913.53-1.063-0.78525.412-2.686-0.8133.556-1.7832.41525.446
150II_DA-23DT-22:DA22DT23_JJ0.563-0.5172.794-2.1675.82923.271-2.788-1.9252.52914.1295.25424.077
166II_DA-5DC-4:DG4DT5_JJ0.158-0.7173.5634.9273.66625.626-2.6321.0773.3998.116-10.91126.339
170II_DA-1DT0:DA0DT1_JJ-0.117-1.2133.654-3.6790.77436.514-2.045-0.3763.6231.2315.85236.7
177II_DA6DC7:DG-7DT-6_JJ0.9220.223.6948.435-1.78934.2310.672-0.0683.792-2.982-14.05535.269
184II_DA13DG14:DC-14DT-13_JJ0.7250.1243.4044.2156.36135.306-0.751-0.543.43510.339-6.85136.095
186II_DA15DG16:DC-16DT-15_JJ0.9950.7723.3863.376-9.38636.0512.469-1.0993.171-14.82-5.33137.361
199II_DA28DG29:DC-29DT-28_JJ-0.5140.0573.2840.7378.54427.106-1.861.2173.14117.676-1.52428.406
1101II_DA30DC31:DG-31DT-30_JJ0.255-1.0013.634-1.1796.7433.625-2.842-0.6323.36511.5032.01234.294
1110II_DA39DC40:DG-40DT-39_JJ0.6260.1772.65415.182-0.11531.3480.3110.9442.667-0.199-26.25634.748
1116II_DA45DG46:DC-46DT-45_JJ-0.050.243.203-0.374-1.32135.1750.5890.0293.193-2.1840.61935.201
1126II_DA55DC56:DG-56DT-55_JJ-1.4551.1843.627-0.676-2.23538.7542.0812.0983.58-3.3651.01838.822
1134II_DA63DC64:DG-64DT-63_JJ-1.059-0.433.2730.244-0.04442.104-0.5941.4993.267-0.061-0.3442.105
1136II_DA65DG66:DC-66DT-65_JJ-0.316-0.9263.554-4.4176.98438.38-2.27-0.0933.35610.4756.62539.227
1143II_DA72DT73:DA-73DT-72_JJ0.328-0.3143.673-7.3623.99243.335-0.835-1.2053.5335.3469.85944.098
13II_DC-71DT-70:DA70DG71_JJ-0.0460.5743.0093.796-2.91635.5451.3140.5722.934-4.75-6.18335.856
16II_DC-68DA-67:DT67DG68_JJ0.7570.2813.1351.9392.01844.9090.192-0.823.1722.639-2.53544.991
19II_DC-65DA-64:DT64DG65_JJ0.1820.3543.86210.07715.18334.767-1.6931.2033.62523.518-15.60939.122
113II_DC-61DC-60:DG60DG61_JJ0.691-0.6533.396-9.15110.73337.193-2.202-2.0762.86616.13413.75639.689
114II_DC-60DT-59:DA59DG60_JJ-0.7950.0323.3170.2630.21736.5170.021.3053.3120.346-0.41936.518
118II_DC-56DA-55:DT55DG56_JJ0.015-0.8922.739-0.8281.96927.198-2.298-0.2022.6684.1781.75827.28
121II_DC-52DA-51:DT51DG52_JJ-0.5440.7543.668-5.22627.92532.141-2.4490.0953.33841.7177.80742.647
123II_DC-50DC-49:DG49DG50_JJ0.37-0.4433.572-5.068.94337.241-1.854-1.233.30613.6887.74438.584
124II_DC-49DT-48:DA48DG49_JJ-0.423-0.4053.1685.5278.13132.795-1.9031.5452.88114.014-9.52534.198
126II_DC-47DT-46:DA46DG47_JJ-0.7891.853.553-0.512-23.69943.8713.8910.9052.333-29.320.63349.586
141II_DC-32DT-31:DA31DG32_JJ0.7170.6063.4758.2999.07937.231-0.3040.0343.59413.768-12.58539.142
146II_DC-27DG-26:DC26DG27_JJ-2.370.9213.554-15.087-8.88140.912.2011.4733.885-12.06220.49144.351
148II_DC-25DC-24:DG24DG25_JJ-1.1780.553.049-2.353-10.81132.7962.4631.6482.809-18.5024.02734.563
149II_DC-24DA-23:DT23DG24_JJ-0.3870.293.6664.12618.22841.735-1.4550.9143.4524.184-5.47445.558
152II_DC-21DC-20:DG20DG21_JJ1.027-1.4333.617-0.64715.45428.848-5.229-1.9392.52128.5741.19632.656
153II_DC-20DC-19:DG19DG20_JJ0.52-0.0413.6462.21116.49634.425-2.409-0.4813.31626.071-3.49438.128
154II_DC-19DG-18:DC18DG19_JJ-1.070.2723.687-1.62718.81429.634-2.8551.4923.32532.9142.84635.026
156II_DC-16DT-15:DA15DG16_JJ-0.2182.1344.255-10.745-2.45346.2512.907-0.8514.094-3.07213.45547.476
158II_DC-14DG-12:DC12DG13_JJ-0.9381.0414.66615.2091.41151.5181.0312.3764.2761.584-17.07453.586
160II_DC-11DT-10:DA10DG11_JJ0.2770.792.9827.223-0.35534.9161.3380.5122.97-0.585-11.88135.635
162II_DC-9DG-8:DC8DG9_JJ0.430.6823.72-12.4999.6636.801-0.279-2.2823.46714.50818.77339.94
165II_DC-6DA-5:DT5DG6_JJ1.5231.9833.907-0.503-21.72845.1854.049-1.8452.726-26.5440.61449.892
167II_DC-4DT-3:DA3DG4_JJ0.7510.0613.0940.4260.21140.3950.065-1.0423.1020.306-0.61640.398
172II_DC1DC2:DG-2DG-1_JJ0.612-0.7523.448-2.2799.56931.59-2.968-1.4683.04717.0664.06533.049
173II_DC2DT3:DA-3DG-2_JJ-0.8980.1042.969.401-3.19533.1790.6032.7692.596-5.446-16.02234.592
176II_DC5DA6:DT-6DG-5_JJ-0.6021.6533.758-12.104-13.63738.3213.83-0.5313.072-19.48717.29642.29
178II_DC7DT8:DA-8DG-7_JJ-0.989-0.0083.591-4.0235.74239.323-0.7490.9333.6348.4515.92239.919
182II_DC11DC12:DG-12DG-11_JJ0.4640.3233.2395.46512.45830.804-1.5290.1143.16622.148-9.71533.608
183II_DC12DA13:DT-13DG-12_JJ-0.7570.9853.08-4.384-0.86935.8851.7030.6323.124-1.4047.08236.153
191II_DC20DC21:DG-21DG-20_JJ0.6-0.2513.2353.5839.89634.235-1.819-0.4663.09116.339-5.91635.77
192II_DC21DC22:DG-22DG-21_JJ0.383-1.0093.342.08411.79126.338-4.548-0.3222.67324.34-4.30328.888
193II_DC22DC23:DG-23DG-22_JJ-0.765-0.4133.695-7.1788.34433.713-2.0790.0523.57913.93411.98735.414
194II_DC23DC24:DG-24DG-23_JJ0.641-0.2393.1682.5352.85331.246-0.96-0.7213.1755.272-4.68431.472
195II_DC24DC25:DG-25DG-24_JJ1.0150.3293.3883.8622.13439.6110.223-1.0193.483.137-5.67839.847
196II_DC25DG26:DC-26DG-25_JJ-0.921.2123.292.093-6.41140.2752.4231.5433.021-9.233-3.01440.812
198II_DC27DA28:DT-28DG-27_JJ0.192.2713.632-1.619-5.07239.0644.008-0.4863.313-7.5422.40839.411
1102II_DC31DC32:DG-32DG-31_JJ0.1740.013.3625.28512.35627.993-2.4520.7313.07723.879-10.21330.993
1103II_DC32DC33:DG-33DG-32_JJ-0.122-0.6783.447-5.24111.22231.788-2.99-0.6473.02519.5839.14634.058
1104II_DC33DC34:DG-34DG-33_JJ1.0260.2353.852-7.6138.51939.796-0.727-2.43.57912.21310.91541.34
1105II_DC34DG35:DC-35DG-34_JJ-1.5141.0553.197-3.895-20.18535.3093.5891.7782.422-30.3195.8540.692
1108II_DC37DG38:DC-38DG-37_JJ1.4461.1392.5873.174-15.36233.6873.318-1.9592.02-24.901-5.14437.064
1111II_DC40DC41:DG-41DG-40_JJ0.366-0.2483.997-0.0225.63627.046-4.545-0.5792.7744.2170.03437.1
1112II_DC41DC42:DG-42DG-41_JJ0.217-0.543.872-17.79914.17329.866-2.983-3.0272.81223.65929.71437.388
1113II_DC42DT43:DA-43DG-42_JJ-0.066-0.2293.5992.1667.07936.527-1.3870.4183.48611.153-3.41337.244
1115II_DC44DA45:DT-45DG-44_JJ-0.2381.313.212-0.985-9.73537.2233.1220.2472.8-14.9371.51138.443
1120II_DC49DG50:DC-50DG-49_JJ-0.7560.4653.4764.52218.73738.787-1.3761.5133.25726.329-6.35443.146
1123II_DC52DC53:DG-53DG-52_JJ0.258-0.3432.597.0676.82825.322-2.0930.8592.40214.881-15.40127.133
1124II_DC53DG54:DC-54DG-53_JJ-0.441.743.014-6.14611.56430.4541.039-0.2983.45320.84611.0833.089
1127II_DC56DT57:DA-57DG-56_JJ0.5640.1393.1178.25.43741.078-0.3510.0373.1617.617-11.48842.191
1130II_DC59DG60:DC-60DG-59_JJ-0.3761.8183.139-9.737-7.71234.0553.924-0.6542.682-12.65715.98136.187
1133II_DC62DA63:DT-63DG-62_JJ-0.622-1.1063.1382.22326.81734.328-3.731.0271.81238.897-3.22543.367
1135II_DC64DA65:DT-65DG-64_JJ0.8261.2312.923-2.713-5.5129.1873.368-2.0852.567-10.7835.3129.813
15II_DG-69DC-68:DG68DC69_JJ-1.157-0.012.688-2.811-5.29726.9961.061.8472.744-11.1735.92927.642
111II_DG-63DT-62:DA62DC63_JJ-0.196-0.6593.028-4.5692.98334.418-1.519-0.3132.9635.0037.66134.835
129II_DG-44DT-43:DA43DC44_JJ-0.817-0.4043.0991.592-1.18636.046-0.4941.5313.072-1.915-2.5736.099
131II_DG-42DT-41:DA41DC42_JJ-0.321-0.6933.38614.16111.98330.542-2.8492.5522.56320.542-24.27735.619
133II_DG-40DT-39:DA39DC40_JJ-0.013-0.8373.364-14.065-7.20726.711-0.082-2.8733.108-14.13727.5930.962
137II_DG-36DT-35:DA35DC36_JJ-1.2971.6023.103-3.72-21.61448.3173.0251.2492.326-24.9674.29752.789
139II_DG-34DT-33:DA33DC34_JJ-0.369-0.1373.6229.6792.77730.614-0.7872.553.3295.09-17.7432.19
143II_DG-30DT-29:DA29DC30_JJ-1.025-0.9633.158-15.614-4.43426.265-0.879-1.3593.348-8.77330.89230.8
147II_DG-26DC-25:DG25DC26_JJ1.5350.9693.0442.481-9.30640.1932.289-1.9342.846-13.311-3.54941.285
155II_DG-18DC-16:DG16DC18_JJ0.231.5515.39820.142-6.34768.5021.690.9445.148-5.507-17.47871.302
159II_DG-12DC-11:DG11DC12_JJ-1.115-0.1843.326-16.3555.60526.47-1.5-1.3383.33810.88831.77231.531
163II_DG-8DT-7:DA7DC8_JJ0.295-0.2893.09415.69.61332.257-1.7011.5552.75815.812-25.65836.978
185II_DG14DA15:DT-15DC-14_JJ-0.8911.4083.679-3.118-11.63345.7712.7870.8363.298-14.663.92947.247
187II_DG16DG17:DC-17DC-16_JJ-0.8440.3453.101-8.7474.34833.959-0.0670.1133.2327.2614.60535.296
188II_DG17DG18:DC-18DC-17_JJ0.074-0.0293.697-0.111.99138.912-0.315-0.1253.6912.9860.16538.962
189II_DG18DT19:DA-19DC-18_JJ-0.248-0.4262.8831.85412.06127.243-2.980.8132.45624.13-3.70829.804
197II_DG26DC27:DG-27DC-26_JJ0.9570.4623.0372.3740.12131.7290.822-1.3383.10.22-4.33531.816
1100II_DG29DA30:DT-30DC-29_JJ-0.2740.5983.032-2.2064.90536.9230.3230.1533.0947.6943.4637.299
1106II_DG35DG36:DC-36DC-35_JJ0.4480.5373.9257.564-15.03735.152.9830.4223.446-23.32-11.7338.857
1107II_DG36DC37:DG-37DC-36_JJ-0.1320.0783.556-4.177-6.49939.5550.914-0.3223.497-9.4946.10140.273
1109II_DG38DA39:DT-39DC-38_JJ-0.732-0.3223.4029.56.82642.149-1.0941.9053.0899.278-12.91443.671
1117II_DG46DG47:DC-47DC-46_JJ-0.1832.1553.553-7.487-32.07152.7643.524-0.1522.064-32.7517.64661.567
1118II_DG47DT48:DA-48DC-47_JJ-0.061-0.6433.4287.6518.85923.219-3.9062.2732.83720.429-17.64325.966
1121II_DG50DG51:DC-51DC-50_JJ-1.275-0.5952.158-19.4861.84915.274-1.86-2.032.2894.94952.15324.782
1122II_DG51DC52:DG-52DC-51_JJ0.3730.123.5889.2798.76341.812-0.7770.4933.54411.948-12.65243.633
1125II_DG54DA55:DT-55DC-54_JJ1.156-1.0612.728-5.6150.41431.858-1.963-2.8712.480.74710.1332.339
1129II_DG58DC59:DG-59DC-58_JJ1.0360.6512.893-4.5781.78736.3640.821-2.1912.7742.8477.29436.683
1131II_DG60DG61:DC-61DC-60_JJ-0.658-0.1883.3762.0954.90340.941-0.8071.1653.2976.973-2.97941.272
1132II_DG61DC62:DG-62DC-61_JJ-0.2870.1983.414-3.7455.90827.203-1.062-0.3413.38912.3047.828.072
1137II_DG66DT67:DA-67DC-66_JJ-0.31-0.3213.1883.292-2.75735.705-0.1370.9593.163-4.476-5.34635.954
1142II_DG71DA72:DT-72DC-71_JJ-0.184-1.0514.3559.516-12.87533.2690.7662.0884.258-21.04-15.5536.822
12II_DT-72DC-71:DG71DA72_JJ0.616-0.6553.554-0.073-4.81739.459-0.348-0.9163.605-7.1020.10839.74
14II_DT-70DG-69:DC69DA70_JJ0.8781.2473.5955.8227.23537.0250.85-0.4923.85111.179-8.99638.132
112II_DT-62DC-61:DG61DA62_JJ0.235-0.0732.8944.17912.27825.766-2.5870.3582.59825.573-8.70328.796
115II_DT-59DA-58:DT58DA59_JJ-0.0580.8882.8785.045-13.89238.6392.5120.5362.408-20.121-7.30741.268
120II_DT-53DC-52:DG52DA53_JJ-0.003-0.3753.151-1.8774.33229.347-1.601-0.373.068.4813.67529.716
125II_DT-48DC-47:DG47DA48_JJ0.254-0.3283.286-6.299.57734.851-1.82-1.2583.00615.48110.16836.631
127II_DT-46DT-45:DA45DA46_JJ0.7140.7493.3166.5285.81736.8020.369-0.2183.4629.057-10.16537.792
128II_DT-45DG-44:DC44DA45_JJ-0.0011.6452.909-14.756-6.17736.8753.004-1.442.44-9.24922.09740.084
130II_DT-43DG-42:DC42DA43_JJ0.7050.1063.141-2.083-0.27638.6390.192-1.3073.099-0.4173.14538.694
132II_DT-41DG-40:DC40DA41_JJ0.098-0.8244.0132.94228.93231.494-4.5070.2082.45943.479-4.42242.616
134II_DT-39DT-38:DA38DA39_JJ0.476-0.8393.4035.373-3.3138.611-0.832-0.0263.493-4.966-8.06139.104
135II_DT-38DT-37:DA37DA38_JJ-1.6120.2133.2270.2420.82933.8590.2342.8053.221.423-0.41533.87
136II_DT-37DG-36:DC36DA37_JJ1.1520.373.1954.126-1.26138.2810.716-1.2383.283-1.916-6.26838.515
138II_DT-35DG-34:DC34DA35_JJ1.591.2283.103-3.606-7.06335.952.803-2.9572.657-11.2755.75736.786
140II_DT-33DC-32:DG32DA33_JJ0.695-0.0783.283-1.6816.99734.095-1.192-1.4163.16911.772.82834.824
142II_DT-31DG-30:DC30DA31_JJ-0.113-0.1113.7351.33823.46935.702-2.8760.313.09434.111-1.94442.535
144II_DT-29DT-28:DA28DA29_JJ-0.208-0.3222.62913.6525.76132.329-1.1931.9162.2749.734-23.06735.481
145II_DT-28DC-27:DG27DA28_JJ0.5651.2023.779-5.2325.85236.1290.97-1.7193.8059.3018.31636.944
151II_DT-22DC-21:DG21DA22_JJ-0.6260.8263.5091.585-5.02830.7552.541.4793.299-9.394-2.96131.193
157II_DT-15DC-14:DG13DA15_JJ1.310.1535.856-16.067-2.92559.3270.392-2.6135.364-2.89615.90761.336
161II_DT-10DC-9:DG9DA10_JJ0.43-0.1212.79513.87210.37232.794-1.4210.9682.61216.976-22.70536.975
164II_DT-7DC-6:DG6DA7_JJ0.4531.1733.2524.75-6.27537.5772.549-0.1113.057-9.612-7.27738.363
168II_DT-3DT-2:DA2DA3_JJ0.191-0.0643.3297.1923.88134.986-0.6720.7433.2786.348-11.76535.899
169II_DT-2DA-1:DT1DA2_JJ-0.277-0.1913.486-9.8952.67233.144-0.763-1.1743.4014.5516.85234.65
171II_DT0DC1:DG-1DA0_JJ-0.164-0.3443.0786.941-3.81735.175-0.0451.1953.012-6.219-11.30936.028
174II_DT3DT4:DA-4DA-3_JJ0.5790.4642.7069.255-2.70236.7331.0060.1092.728-4.199-14.38337.935
175II_DT4DC5:DG-5DA-4_JJ1.9231.463.0493.9823.74739.9631.704-2.353.3355.451-5.79440.32
179II_DT8DT9:DA-9DA-8_JJ-0.138-0.1463.0754.8894.86534.224-0.9320.9222.988.165-8.20534.892
180II_DT9DT10:DA-10DA-9_JJ0.379-0.3833.541-2.7049.90929.182-2.758-1.2673.19618.9415.16830.9
181II_DT10DC11:DG-11DA-10_JJ-0.1580.383.362-6.155.45334.238-0.219-0.6943.3599.10110.26335.182
190II_DT19DC20:DG-20DA-19_JJ0.316-0.0973.482-1.075.36532.405-1.147-0.7543.4119.5291.932.851
1114II_DT43DC44:DG-44DA-43_JJ0.437-0.5273.265-0.3540.64637.767-0.896-0.7213.2520.9980.54637.774
1119II_DT48DC49:DG-49DA-48_JJ-0.1530.3452.9374.7226.52438.248-0.1950.7432.9169.824-7.11139.056
1128II_DT57DG58:DC-58DA-57_JJ-0.829-0.5924.18-10.132-1.59626.209-0.719-1.4644.228-3.36121.33228.112
1138II_DT67DT68:DA-68DA-67_JJ-0.116-0.5743.5461.4347.7737.108-1.9450.3743.35612.043-2.22237.911
1139II_DT68DT69:DA-69DA-68_JJ0.578-1.0023.85-9.431-15.1225.7031.696-3.2963.491-29.84818.61731.191
1140II_DT69DT70:DA-70DA-69_JJ0.6490.4053.1037.406-5.53637.6171.264-0.1073.083-8.431-11.27738.697
1141II_DT70DG71:DC-71DA-70_JJ0.87-0.8995.006-4.11312.11444.795-2.659-1.6184.53715.5245.27146.495

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.