5FD3: Base Pair Morphology Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 5FD3 PDB ID: 5FD3

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	C_DA2:DT12_D	0.152	-0.042	0.126	1.986	-13.728	-1.851
1	8	C_DA8:DT6_D	0.034	-0.085	0.604	14.791	-26.474	2.304
1	9	C_DA9:DT5_D	0.139	-0.169	0.224	9.631	-24.104	1.917
1	10	C_DA10:DT4_D	0.03	-0.593	-0.2	-0.855	-21.857	-3.95
1	11	C_DC11:DG3_D	-0.05	-0.033	0.187	-1.403	-15.384	4.417
1	1	C_DG1:DC13_D	-0.787	-0.465	0.058	6.015	-6.352	-0.899
1	3	C_DG3:DC11_D	0.491	-0.082	0.242	1.55	-11.728	7.56
1	7	C_DG7:DC7_D	-0.575	-0.167	0.121	13.722	-5.771	1.826
1	4	C_DT4:DA10_D	-0.457	-0.354	0.093	-4.703	-20.904	-1.633
1	5	C_DT5:DA9_D	-0.376	-0.154	0.13	-14.066	-21.841	3.209
1	6	C_DT6:DA8_D	-0.052	0.014	0.077	-15.137	-9.841	-2.564
1	12	C_DT12:DA2_D	0.336	-0.128	-0.031	-8.947	-8.06	-0.206
1	14	H_DA2:DT12_I	0.411	-0.171	-0.108	1.631	-16.945	-0.992
1	20	H_DA8:DT6_I	0.111	0.015	0.549	14.724	-23.078	-0.377
1	21	H_DA9:DT5_I	-0.039	-0.138	0.04	11.15	-24.862	0.176
1	22	H_DA10:DT4_I	-0.031	-0.637	-0.002	-1.757	-18.45	-3.851
1	23	H_DC11:DG3_I	0.278	-0.106	0.271	-5.892	-14.247	1.806
1	13	H_DG1:DC13_I	-0.899	-0.24	-0.249	2.544	-11.362	-1.926
1	15	H_DG3:DC11_I	0.65	-0.092	0.207	-3.666	-14.402	6.273
1	19	H_DG7:DC7_I	-0.139	0.046	0.079	16.065	-6.431	5.997
1	16	H_DT4:DA10_I	-0.183	-0.276	0.223	-4.481	-21.009	1.816
1	17	H_DT5:DA9_I	-0.198	-0.093	0.326	-14.586	-20.448	0.587
1	18	H_DT6:DA8_I	0.09	-0.071	0.042	-7.084	-9.131	-3.066
1	24	H_DT12:DA2_I	0.079	-0.18	0.063	-12.739	-8.729	-1.291

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.