A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 5FD3  PDB ID: 5FD3 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12C_DA2:DT12_D0.152-0.0420.1261.986-13.728-1.851
18C_DA8:DT6_D0.034-0.0850.60414.791-26.4742.304
19C_DA9:DT5_D0.139-0.1690.2249.631-24.1041.917
110C_DA10:DT4_D0.03-0.593-0.2-0.855-21.857-3.95
111C_DC11:DG3_D-0.05-0.0330.187-1.403-15.3844.417
11C_DG1:DC13_D-0.787-0.4650.0586.015-6.352-0.899
13C_DG3:DC11_D0.491-0.0820.2421.55-11.7287.56
17C_DG7:DC7_D-0.575-0.1670.12113.722-5.7711.826
14C_DT4:DA10_D-0.457-0.3540.093-4.703-20.904-1.633
15C_DT5:DA9_D-0.376-0.1540.13-14.066-21.8413.209
16C_DT6:DA8_D-0.0520.0140.077-15.137-9.841-2.564
112C_DT12:DA2_D0.336-0.128-0.031-8.947-8.06-0.206
114H_DA2:DT12_I0.411-0.171-0.1081.631-16.945-0.992
120H_DA8:DT6_I0.1110.0150.54914.724-23.078-0.377
121H_DA9:DT5_I-0.039-0.1380.0411.15-24.8620.176
122H_DA10:DT4_I-0.031-0.637-0.002-1.757-18.45-3.851
123H_DC11:DG3_I0.278-0.1060.271-5.892-14.2471.806
113H_DG1:DC13_I-0.899-0.24-0.2492.544-11.362-1.926
115H_DG3:DC11_I0.65-0.0920.207-3.666-14.4026.273
119H_DG7:DC7_I-0.1390.0460.07916.065-6.4315.997
116H_DT4:DA10_I-0.183-0.2760.223-4.481-21.0091.816
117H_DT5:DA9_I-0.198-0.0930.326-14.586-20.4480.587
118H_DT6:DA8_I0.09-0.0710.042-7.084-9.131-3.066
124H_DT12:DA2_I0.079-0.180.063-12.739-8.729-1.291

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.