5FD3: Base Pair Morphology Step Parameters

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NDB ID: 5FD3 PDB ID: 5FD3

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	CC_DA2DG3:DC11DT12_DD	0.345	-0.391	3.326	-0.774	1.736	36.505	-0.865	-0.659	3.297	2.769	1.234	36.552
1	8	CC_DA8DA9:DT5DT6_DD	0.03	-0.355	3.336	1.53	-4.138	38.487	-0.015	0.147	3.354	-6.252	-2.312	38.73
1	9	CC_DA9DA10:DT4DT5_DD	0.102	-0.487	3.417	2.324	1.379	35.835	-0.994	0.18	3.396	2.237	-3.771	35.934
1	10	CC_DA10DC11:DG3DT4_DD	0.695	-0.635	3.23	-0.352	-0.844	32.291	-0.994	-1.311	3.237	-1.517	0.633	32.303
1	11	CC_DC11DT12:DA2DG3_DD	0.084	-0.214	3.461	4.302	4.127	37.285	-0.894	0.457	3.408	6.405	-6.676	37.742
1	1	CC_DG1DA2:DT12DC13_DD	-0.353	-0.335	3.373	-1.367	1.535	38.248	-0.709	0.362	3.368	2.341	2.084	38.301
1	3	CC_DG3DT4:DA10DC11_DD	-1.111	-1.041	3.274	0.062	0.836	27.478	-2.396	2.352	3.239	1.759	-0.13	27.491
1	7	CC_DG7DA8:DT6DC7_DD	-0.878	0.556	3.268	-4.871	-0.15	41.215	0.801	0.713	3.344	-0.213	6.891	41.49
1	4	CC_DT4DT5:DA9DA10_DD	0.361	-0.209	3.419	0.718	0.399	42.27	-0.333	-0.423	3.422	0.553	-0.996	42.277
1	5	CC_DT5DT6:DA8DA9_DD	0.135	0.065	3.241	1.16	-0.376	35.917	0.158	-0.055	3.243	-0.61	-1.881	35.937
1	6	CC_DT6DG7:DC7DA8_DD	0.207	1.165	2.7	-1.456	7.242	23.929	0.804	-0.857	2.904	16.957	3.408	25.028
1	13	HH_DA2DG3:DC11DT12_II	0.341	-0.292	3.384	-1.484	3.729	36.091	-1.004	-0.76	3.322	5.996	2.386	36.306
1	19	HH_DA8DA9:DT5DT6_II	0.155	-0.245	3.282	3.873	-2.352	36.593	-0.066	0.284	3.289	-3.729	-6.14	36.863
1	20	HH_DA9DA10:DT4DT5_II	0.297	-0.658	3.518	-1.043	0.804	36.222	-1.178	-0.634	3.493	1.292	1.677	36.245
1	21	HH_DA10DC11:DG3DT4_II	0.36	-0.737	3.284	0.604	0.697	34.284	-1.359	-0.516	3.274	1.182	-1.024	34.296
1	22	HH_DC11DT12:DA2DG3_II	0.105	-0.253	3.405	2.687	5.371	35.047	-1.227	0.235	3.33	8.838	-4.422	35.541
1	12	HH_DG1DA2:DT12DC13_II	-0.16	-0.107	3.313	-2.585	3.077	40.472	-0.499	-0.06	3.3	4.435	3.725	40.663
1	14	HH_DG3DT4:DA10DC11_II	-0.811	-0.997	3.223	-0.632	-3.351	27.589	-1.266	1.536	3.336	-6.992	1.319	27.794
1	18	HH_DG7DA8:DT6DC7_II	-1.204	0.531	3.309	-4.521	-1.461	40.1	0.938	1.221	3.399	-2.121	6.566	40.369
1	15	HH_DT4DT5:DA9DA10_II	0.157	-0.369	3.416	-0.487	2.726	40.987	-0.835	-0.278	3.384	3.887	0.695	41.077
1	16	HH_DT5DT6:DA8DA9_II	0.042	-0.232	3.077	2.131	-4.05	33.732	0.213	0.249	3.08	-6.939	-3.651	34.032
1	17	HH_DT6DG7:DC7DA8_II	0.595	1.361	2.837	0.841	9.002	27.196	0.843	-1.026	3.135	18.506	-1.729	28.632

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.