A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 5FD3  PDB ID: 5FD3 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12CC_DA2DG3:DC11DT12_DD0.345-0.3913.326-0.7741.73636.505-0.865-0.6593.2972.7691.23436.552
18CC_DA8DA9:DT5DT6_DD0.03-0.3553.3361.53-4.13838.487-0.0150.1473.354-6.252-2.31238.73
19CC_DA9DA10:DT4DT5_DD0.102-0.4873.4172.3241.37935.835-0.9940.183.3962.237-3.77135.934
110CC_DA10DC11:DG3DT4_DD0.695-0.6353.23-0.352-0.84432.291-0.994-1.3113.237-1.5170.63332.303
111CC_DC11DT12:DA2DG3_DD0.084-0.2143.4614.3024.12737.285-0.8940.4573.4086.405-6.67637.742
11CC_DG1DA2:DT12DC13_DD-0.353-0.3353.373-1.3671.53538.248-0.7090.3623.3682.3412.08438.301
13CC_DG3DT4:DA10DC11_DD-1.111-1.0413.2740.0620.83627.478-2.3962.3523.2391.759-0.1327.491
17CC_DG7DA8:DT6DC7_DD-0.8780.5563.268-4.871-0.1541.2150.8010.7133.344-0.2136.89141.49
14CC_DT4DT5:DA9DA10_DD0.361-0.2093.4190.7180.39942.27-0.333-0.4233.4220.553-0.99642.277
15CC_DT5DT6:DA8DA9_DD0.1350.0653.2411.16-0.37635.9170.158-0.0553.243-0.61-1.88135.937
16CC_DT6DG7:DC7DA8_DD0.2071.1652.7-1.4567.24223.9290.804-0.8572.90416.9573.40825.028
113HH_DA2DG3:DC11DT12_II0.341-0.2923.384-1.4843.72936.091-1.004-0.763.3225.9962.38636.306
119HH_DA8DA9:DT5DT6_II0.155-0.2453.2823.873-2.35236.593-0.0660.2843.289-3.729-6.1436.863
120HH_DA9DA10:DT4DT5_II0.297-0.6583.518-1.0430.80436.222-1.178-0.6343.4931.2921.67736.245
121HH_DA10DC11:DG3DT4_II0.36-0.7373.2840.6040.69734.284-1.359-0.5163.2741.182-1.02434.296
122HH_DC11DT12:DA2DG3_II0.105-0.2533.4052.6875.37135.047-1.2270.2353.338.838-4.42235.541
112HH_DG1DA2:DT12DC13_II-0.16-0.1073.313-2.5853.07740.472-0.499-0.063.34.4353.72540.663
114HH_DG3DT4:DA10DC11_II-0.811-0.9973.223-0.632-3.35127.589-1.2661.5363.336-6.9921.31927.794
118HH_DG7DA8:DT6DC7_II-1.2040.5313.309-4.521-1.46140.10.9381.2213.399-2.1216.56640.369
115HH_DT4DT5:DA9DA10_II0.157-0.3693.416-0.4872.72640.987-0.835-0.2783.3843.8870.69541.077
116HH_DT5DT6:DA8DA9_II0.042-0.2323.0772.131-4.0533.7320.2130.2493.08-6.939-3.65134.032
117HH_DT6DG7:DC7DA8_II0.5951.3612.8370.8419.00227.1960.843-1.0263.13518.506-1.72928.632

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.