A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: 5FRM  PDB ID: 5FRM 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14C_DA7:DT13_D-0.135-0.0680.1221.824-15.973-2.001
18C_DA11:DT9_D-0.002-0.1160.0855.037-21.7650.639
19C_DA12:DT8_D0.267-0.0770.3611.014-18.4750.894
116C_DA19:DT1_D0.0460.003-0.877-5.353-9.60712.014
13C_DC6:DG14_D0.298-0.070.157-1.1720.5732.427
113C_DC16:DG4_D0.1420.0180.118-11.059-14.182.657
115C_DC18:DG2_D0.224-0.065-0.0796.105-3.4521.357
11C_DG4:DC16_D-0.3110.039-0.388-28.245-21.1040.859
16C_DG9:DC11_D-0.18-0.001-0.0487.2075.4581.456
17C_DG10:DC10_D-0.415-0.0940.29417.45-11.47-1.427
114C_DG17:DC3_D-0.464-0.2010.156-2.03-13.8841.116
12C_DT5:DA15_D-0.131-0.0390.165-20.802-5.323.354
15C_DT8:DA12_D0.072-0.1290.097-2.791-22.325.052
110C_DT13:DA7_D-0.011-0.0030.252-4.287-19.6482.106
111C_DT14:DA6_D-0.153-0.0930.278-7.596-19.41.397
112C_DT15:DA5_D-0.226-0.1070.054-8.356-17.8751.197

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.