A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: 5FRM  PDB ID: 5FRM 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14CC_DA7DT8:DA12DT13_DD0.334-0.4563.3560.7694.24933.701-1.473-0.4473.2827.292-1.31933.968
18CC_DA11DA12:DT8DT9_DD-0.18-0.113.201-3.691-2.07640.6280.067-0.143.206-2.985.29840.839
19CC_DA12DT13:DA7DT8_DD-0.031-0.7713.3151.373-3.231.982-0.8060.3083.37-5.785-2.48332.166
13CC_DC6DA7:DT13DG14_DD-1.5310.9863.233-3.8564.87434.8620.881.9323.4798.0566.37335.395
113CC_DC16DG17:DC3DG4_DD0.0660.6963.183-2.71111.04833.04-0.529-0.5253.22818.7474.634.892
115CC_DC18DA19:DT1DG2_DD0.733-0.2273.6988.5412.50828.274-3.0180.453.38123.586-16.10332.002
11CC_DG4DT5:DA15DC16_DD0.5940.13.161-2.9581.91235.465-0.102-1.3833.1043.1284.84235.634
16CC_DG9DG10:DC10DC11_DD-0.9730.5293.06-4.2286.4330.508-0.1941.0253.20511.9817.87831.441
17CC_DG10DA11:DT9DC10_DD0.042-0.3783.5533.426-0.18240.096-0.5270.3613.547-0.264-4.98540.236
114CC_DG17DC18:DG2DC3_DD0.736-0.1853.0541.3542.02732.969-0.645-1.0793.0643.566-2.38233.057
12CC_DT5DC6:DG14DA15_DD0.4440.7793.007-0.56910.30330.584-0.355-0.8973.09218.871.04332.238
15CC_DT8DG9:DC11DA12_DD0.7781.9343.2163.9684.50536.3082.432-0.6763.4867.169-6.31436.785
110CC_DT13DT14:DA6DA7_DD-0.104-0.3533.249-0.127-4.07837.415-0.0180.1453.268-6.3340.19737.629
111CC_DT14DT15:DA5DA6_DD0.02-0.0733.2521.852-5.5738.4430.5650.1943.229-8.4-2.79338.872
112CC_DT15DC16:DG4DA5_DD-0.13-0.0723.308-1.473-1.12337.9770.0340.013.311-1.7252.26238.02

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.