5FRM: Base Pair Morphology Step Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: 5FRM PDB ID: 5FRM

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	CC_DA7DT8:DA12DT13_DD	0.334	-0.456	3.356	0.769	4.249	33.701	-1.473	-0.447	3.282	7.292	-1.319	33.968
1	8	CC_DA11DA12:DT8DT9_DD	-0.18	-0.11	3.201	-3.691	-2.076	40.628	0.067	-0.14	3.206	-2.98	5.298	40.839
1	9	CC_DA12DT13:DA7DT8_DD	-0.031	-0.771	3.315	1.373	-3.2	31.982	-0.806	0.308	3.37	-5.785	-2.483	32.166
1	3	CC_DC6DA7:DT13DG14_DD	-1.531	0.986	3.233	-3.856	4.874	34.862	0.88	1.932	3.479	8.056	6.373	35.395
1	13	CC_DC16DG17:DC3DG4_DD	0.066	0.696	3.183	-2.711	11.048	33.04	-0.529	-0.525	3.228	18.747	4.6	34.892
1	15	CC_DC18DA19:DT1DG2_DD	0.733	-0.227	3.698	8.54	12.508	28.274	-3.018	0.45	3.381	23.586	-16.103	32.002
1	1	CC_DG4DT5:DA15DC16_DD	0.594	0.1	3.161	-2.958	1.912	35.465	-0.102	-1.383	3.104	3.128	4.842	35.634
1	6	CC_DG9DG10:DC10DC11_DD	-0.973	0.529	3.06	-4.228	6.43	30.508	-0.194	1.025	3.205	11.981	7.878	31.441
1	7	CC_DG10DA11:DT9DC10_DD	0.042	-0.378	3.553	3.426	-0.182	40.096	-0.527	0.361	3.547	-0.264	-4.985	40.236
1	14	CC_DG17DC18:DG2DC3_DD	0.736	-0.185	3.054	1.354	2.027	32.969	-0.645	-1.079	3.064	3.566	-2.382	33.057
1	2	CC_DT5DC6:DG14DA15_DD	0.444	0.779	3.007	-0.569	10.303	30.584	-0.355	-0.897	3.092	18.87	1.043	32.238
1	5	CC_DT8DG9:DC11DA12_DD	0.778	1.934	3.216	3.968	4.505	36.308	2.432	-0.676	3.486	7.169	-6.314	36.785
1	10	CC_DT13DT14:DA6DA7_DD	-0.104	-0.353	3.249	-0.127	-4.078	37.415	-0.018	0.145	3.268	-6.334	0.197	37.629
1	11	CC_DT14DT15:DA5DA6_DD	0.02	-0.073	3.252	1.852	-5.57	38.443	0.565	0.194	3.229	-8.4	-2.793	38.872
1	12	CC_DT15DC16:DG4DA5_DD	-0.13	-0.072	3.308	-1.473	-1.123	37.977	0.034	0.01	3.311	-1.725	2.262	38.02

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.