5FW3: Base Pair Morphology Parameters

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As of 29-Jun-2022 number of released structures: 12153

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NDB ID: 5FW3 PDB ID: 5FW3

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	A_A1:DT28_C	-0.063	-0.138	-0.24	-10.309	-9.685	-6.254
1	3	A_A3:DT26_C	0.053	-0.104	0.044	-7.253	-0.809	5.272
1	4	A_A4:DT25_C	0.086	-0.121	0.123	3.004	3.909	0.102
1	8	A_A8:DT21_C	0.082	-0.192	0.259	-2.095	-2.294	4.306
1	9	A_A9:DT20_C	-0.016	-0.224	0.06	-2.49	-9.597	2.07
1	15	A_A15:DT14_C	-0.002	-0.224	0.003	-2.735	-6.104	2.133
1	16	A_A16:DT13_C	0.029	-0.176	-0.33	-2.117	-0.285	1.235
1	17	A_A17:DT12_C	0.091	-0.21	-0.315	-5.498	-2.045	3.245
1	18	A_A18:DT11_C	-0.167	-0.193	-0.146	-12.544	-3.976	5.453
1	19	A_A19:DT10_C	-0.062	-0.174	-0.045	-0.899	-3.588	6.412
1	20	A_A20:DT9_C	-0.09	-0.156	-0.233	-3.033	-2.749	3.515
1	26	A_A26:U45_A	0.069	-0.088	0.075	5.481	6.655	3.187
1	30	A_A32:U37_A	-0.063	-0.112	-0.142	-0.481	5.281	-7.802
1	32	A_A52:G62_A	-7.944	-5.234	0.003	-22.186	15.39	-48.474
1	36	A_A68:G81_A	-0.026	2.994	-0.035	-10.648	25.24	-56.331
1	37	A_A69:U80_A	0.137	-0.193	1.26	12.919	-0.279	-1.806
1	5	A_C5:DG24_C	0.178	-0.164	0.111	-0.558	-1.934	1.915
1	7	A_C7:DG22_C	0.176	-0.168	-0.063	-5.914	4.09	0.921
1	28	A_C30:G39_A	0.161	-0.189	0.29	-6.199	-11.746	0.757
1	35	A_C55:G58_A	0.19	-0.215	0.571	14.165	6.019	3.43
1	38	A_C70:G79_A	0.162	-0.202	0.625	5.203	-8.001	0.189
1	13	A_G13:DC16_C	-0.223	-0.108	-0.116	-2.204	2.852	2.607
1	21	A_G21:U50_A	-2.628	-0.576	-0.049	-6.213	-4.888	-4.128
1	27	A_G29:C40_A	-0.212	-0.131	-0.112	-8.789	-9.013	0.821
1	31	A_G33:A36_A	8.082	-5.221	1.079	15.136	-14.157	-32.157
1	33	A_G53:C61_A	-0.221	-0.126	-0.29	-9.026	-2.712	0.304
1	34	A_G54:C60_A	-0.242	-0.126	0.23	-3.043	-1.277	0.011
1	41	A_G73:A76_A	7.411	-5.309	0.797	30.408	-5.562	-24.293
1	2	A_U2:DA27_C	-0.148	-0.124	0.106	-3.193	-8.426	2.628
1	6	A_U6:DA23_C	-0.071	-0.062	0.09	-3.875	-0.722	4.551
1	10	A_U10:DA19_C	-0.025	-0.177	-0.238	-5.761	-5.675	5.166
1	11	A_U11:DA18_C	-0.046	-0.145	0.03	-7.781	-8.816	4.366
1	12	A_U12:DA17_C	-0.14	-0.077	0.087	-8.433	-7.675	0.783
1	14	A_U14:DA15_C	-0.007	-0.094	-0.026	-2.36	3.224	4.892
1	22	A_U22:A49_A	-0.074	-0.149	0.223	2.216	-7.318	2.075
1	23	A_U23:A48_A	-0.125	-0.054	0.119	9.738	-9.866	7.179
1	24	A_U24:A47_A	-0.069	-0.189	0.669	-3.697	-3.686	-1.647
1	25	A_U25:A46_A	0.029	-0.173	0.471	0.793	-4.949	2.656
1	29	A_U31:A38_A	-0.059	-0.194	0.308	-0.647	-7.888	-6.61
1	39	A_U71:A78_A	0.071	-0.156	0.222	-3.706	-10.6	-8.977
1	40	A_U72:A77_A	0.005	-0.104	-0.048	-0.752	-2.581	2.846
1	43	C_DA2:DT11_D	0.07	-0.186	0.701	8.634	-11.762	3.44
1	44	C_DA3:DT10_D	0.054	-0.099	-0.19	-4.147	-13.022	1.883
1	48	C_DA8:DT5_D	0.075	-0.137	0.044	7.572	-5.337	1.762
1	42	C_DC1:DG12_D	0.098	-0.351	0.868	4.219	-11.89	-4.472
1	45	C_DC5:DG8_D	0.214	-0.098	-0.298	-1.898	-1.975	1.884
1	47	C_DC7:DG6_D	0.188	-0.085	-0.275	0.262	0.155	-1.226
1	46	C_DG6:DC7_D	-0.278	-0.105	-0.052	-8.569	0.746	4.53

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.