5FW3: Base Pair Morphology Step Parameters

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As of 29-Jun-2022 number of released structures: 12153

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NDB ID: 5FW3 PDB ID: 5FW3

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	AA_A1U2:DA27DT28_CC	0.744	-1.948	3.196	-3.383	3.066	34.901	-3.651	-1.705	2.937	5.085	5.61	35.189
1	3	AA_A3A4:DT25DT26_CC	-1.068	-1.422	3.068	-3.534	7.603	28.441	-4.232	1.415	2.715	15.065	7.002	29.626
1	4	AA_A4C5:DG24DT25_CC	0.649	-1.907	3.469	-4.408	9.122	33.683	-4.49	-1.718	2.771	15.318	7.402	35.131
1	8	AA_A8A9:DT20DT21_CC	0.032	-1.07	3.397	3.563	3.623	32.643	-2.509	0.56	3.248	6.397	-6.291	33.025
1	9	AA_A9U10:DA19DT20_CC	0.435	-1.52	3.477	5.024	1.264	28.464	-3.341	0.314	3.432	2.543	-10.112	28.922
1	15	AA_A15A16:DT13DT14_CC	-0.077	-1.667	3.461	1.227	0.511	29.88	-3.342	0.417	3.427	0.99	-2.378	29.908
1	16	AA_A16A17:DT12DT13_CC	0.664	-2.444	3.422	-0.994	7.057	24.094	-7.572	-1.803	2.583	16.449	2.317	25.111
1	17	AA_A17A18:DT11DT12_CC	-0.001	-2.268	3.56	0.469	0.746	30.054	-4.538	0.106	3.504	1.439	-0.905	30.067
1	18	AA_A18A19:DT10DT11_CC	-0.33	-1.617	3.057	2.672	0.569	27.316	-3.538	1.305	2.978	1.202	-5.641	27.449
1	19	AA_A19A20:DT9DT10_CC	0.718	-2.114	3.633	3.074	-2.109	25.979	-4.002	-0.628	3.847	-4.661	-6.793	26.24
1	20	AA_A20G21:U50DT9_AC	3.486	-0.926	3.509	-3.324	5.48	54.761	-1.335	-3.971	3.21	5.935	3.6	55.106
1	29	AA_A32G33:A36U37_AA	-2.809	-0.947	2.98	1.862	12.578	68.171	-1.238	2.533	2.723	11.123	-1.647	69.205
1	30	AA_A52G53:C61G62_AA	4.321	-1.808	3.207	1.036	-1.443	56.298	-1.834	-4.519	3.322	-1.529	-1.098	56.324
1	33	AA_A68A69:U80G81_AA	2.702	-0.956	2.941	-18.385	19.977	33.679	-2.579	-4.859	0.772	29.294	26.959	43.011
1	34	AA_A69C70:G79U80_AA	-0.162	-2.023	3.395	-0.114	5.501	35.054	-4.121	0.249	3.054	9.063	0.188	35.47
1	5	AA_C5U6:DA23DG24_CC	-0.596	-2.19	3.125	-0.181	10.413	28.592	-5.936	1.107	2.213	20.254	0.352	30.393
1	7	AA_C7A8:DT21DG22_CC	0.264	-1.261	3.088	2.467	14.402	23.221	-5.675	-0.043	1.995	32.031	-5.486	27.382
1	27	AA_C30U31:A38G39_AA	-0.433	-1.192	2.934	-0.886	4.661	29.751	-3.123	0.676	2.731	9.005	1.712	30.119
1	35	AA_C70U71:A78G79_AA	-0.338	-1.682	2.981	4.034	8.59	40.526	-3.149	0.842	2.545	12.2	-5.729	41.576
1	13	AA_G13U14:DA15DC16_CC	0.004	-2.276	3.62	-0.151	4.526	23.114	-7.157	-0.062	3.123	11.158	0.373	23.547
1	21	AA_G21U22:A49U50_AA	-0.201	-0.992	3.201	-5.916	8.682	35.449	-2.68	-0.443	2.882	13.887	9.462	36.925
1	26	AA_G29C30:G39C40_AA	-0.666	-1.478	3.25	-5.643	1.544	31.806	-2.928	0.196	3.244	2.787	10.189	32.326
1	31	AA_G53G54:C60C61_AA	-0.456	-1.87	2.955	-2.869	3.684	34.107	-3.665	0.378	2.772	6.244	4.863	34.416
1	32	AA_G54C55:G58C60_AA	-1.3	-0.748	2.908	-0.255	4.99	17.714	-4.708	3.944	2.617	15.799	0.809	18.4
1	2	AA_U2A3:DT26DA27_CC	-0.576	-1.688	3.242	-1.948	13.776	30.834	-4.901	0.71	2.329	24.411	3.452	33.758
1	6	AA_U6C7:DG22DA23_CC	0.376	-0.784	3.271	6.372	6.478	36.55	-2.05	0.237	3.112	10.137	-9.971	37.625
1	10	AA_U10U11:DA18DA19_CC	0.224	-1.235	3.397	0.519	6.128	32.97	-3.154	-0.303	3.127	10.681	-0.904	33.523
1	11	AA_U11U12:DA17DA18_CC	-0.046	-1.282	3.378	0.706	3.769	32.206	-2.966	0.208	3.21	6.764	-1.268	32.428
1	12	AA_U12G13:DC16DA17_CC	0.556	-1.228	3.242	-1.308	6.474	30.099	-3.512	-1.29	2.895	12.281	2.482	30.799
1	14	AA_U14A15:DT14DA15_CC	-0.123	-1.641	3.273	1.166	9.845	30.559	-4.604	0.417	2.625	18.09	-2.143	32.09
1	22	AA_U22U23:A48A49_AA	0.365	-0.851	3.011	0.0	7.114	34.257	-2.377	-0.607	2.784	11.917	0.001	34.966
1	23	AA_U23U24:A47A48_AA	-0.95	-0.818	3.914	-2.218	20.771	33.48	-4.051	1.109	2.985	32.434	3.464	39.303
1	24	AA_U24U25:A46A47_AA	0.703	-1.317	3.086	1.462	2.962	33.257	-2.746	-0.998	2.989	5.16	-2.547	33.416
1	25	AA_U25A26:U45A46_AA	-0.106	-1.765	2.974	-0.3	8.405	30.949	-4.469	0.147	2.424	15.398	0.55	32.044
1	28	AA_U31A32:U37A38_AA	0.123	-2.08	3.125	-1.096	14.414	28.796	-5.849	-0.382	1.889	26.944	2.05	32.152
1	36	AA_U71U72:A77A78_AA	0.989	-2.222	2.837	8.083	13.745	29.73	-5.555	-0.699	1.859	24.681	-14.513	33.651
1	37	AA_U72G73:A76A77_AA	-2.219	-0.591	2.425	-6.386	0.761	51.896	-0.71	2.19	2.653	0.866	7.266	52.266
1	39	CC_DA2DA3:DT10DT11_DD	-0.757	-0.336	3.527	2.369	-2.884	34.238	-0.085	1.675	3.484	-4.881	-4.009	34.435
1	40	CC_DA3DC5:DG8DT10_DD	0.031	-1.465	6.454	-2.116	3.859	64.806	-1.681	-0.202	6.364	3.596	1.972	64.939
1	38	CC_DC1DA2:DT11DG12_DD	0.176	-0.32	3.168	1.861	2.119	41.36	-0.67	-0.057	3.153	2.996	-2.631	41.452
1	41	CC_DC5DG6:DC7DG8_DD	0.55	-0.489	3.375	1.906	2.55	34.552	-1.223	-0.622	3.357	4.282	-3.2	34.694
1	43	CC_DC7DA8:DT5DG6_DD	0.54	1.324	3.219	2.218	6.092	34.833	1.26	-0.554	3.422	10.068	-3.665	35.413
1	42	CC_DG6DC7:DG6DC7_DD	-0.495	-0.784	3.108	1.546	6.521	30.726	-2.574	1.181	2.857	12.127	-2.874	31.431

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.