A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
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NDB ID: 5FW3  PDB ID: 5FW3 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11AA_A1U2:DA27DT28_CC0.744-1.9483.196-3.3833.06634.901-3.651-1.7052.9375.0855.6135.189
13AA_A3A4:DT25DT26_CC-1.068-1.4223.068-3.5347.60328.441-4.2321.4152.71515.0657.00229.626
14AA_A4C5:DG24DT25_CC0.649-1.9073.469-4.4089.12233.683-4.49-1.7182.77115.3187.40235.131
18AA_A8A9:DT20DT21_CC0.032-1.073.3973.5633.62332.643-2.5090.563.2486.397-6.29133.025
19AA_A9U10:DA19DT20_CC0.435-1.523.4775.0241.26428.464-3.3410.3143.4322.543-10.11228.922
115AA_A15A16:DT13DT14_CC-0.077-1.6673.4611.2270.51129.88-3.3420.4173.4270.99-2.37829.908
116AA_A16A17:DT12DT13_CC0.664-2.4443.422-0.9947.05724.094-7.572-1.8032.58316.4492.31725.111
117AA_A17A18:DT11DT12_CC-0.001-2.2683.560.4690.74630.054-4.5380.1063.5041.439-0.90530.067
118AA_A18A19:DT10DT11_CC-0.33-1.6173.0572.6720.56927.316-3.5381.3052.9781.202-5.64127.449
119AA_A19A20:DT9DT10_CC0.718-2.1143.6333.074-2.10925.979-4.002-0.6283.847-4.661-6.79326.24
120AA_A20G21:U50DT9_AC3.486-0.9263.509-3.3245.4854.761-1.335-3.9713.215.9353.655.106
129AA_A32G33:A36U37_AA-2.809-0.9472.981.86212.57868.171-1.2382.5332.72311.123-1.64769.205
130AA_A52G53:C61G62_AA4.321-1.8083.2071.036-1.44356.298-1.834-4.5193.322-1.529-1.09856.324
133AA_A68A69:U80G81_AA2.702-0.9562.941-18.38519.97733.679-2.579-4.8590.77229.29426.95943.011
134AA_A69C70:G79U80_AA-0.162-2.0233.395-0.1145.50135.054-4.1210.2493.0549.0630.18835.47
15AA_C5U6:DA23DG24_CC-0.596-2.193.125-0.18110.41328.592-5.9361.1072.21320.2540.35230.393
17AA_C7A8:DT21DG22_CC0.264-1.2613.0882.46714.40223.221-5.675-0.0431.99532.031-5.48627.382
127AA_C30U31:A38G39_AA-0.433-1.1922.934-0.8864.66129.751-3.1230.6762.7319.0051.71230.119
135AA_C70U71:A78G79_AA-0.338-1.6822.9814.0348.5940.526-3.1490.8422.54512.2-5.72941.576
113AA_G13U14:DA15DC16_CC0.004-2.2763.62-0.1514.52623.114-7.157-0.0623.12311.1580.37323.547
121AA_G21U22:A49U50_AA-0.201-0.9923.201-5.9168.68235.449-2.68-0.4432.88213.8879.46236.925
126AA_G29C30:G39C40_AA-0.666-1.4783.25-5.6431.54431.806-2.9280.1963.2442.78710.18932.326
131AA_G53G54:C60C61_AA-0.456-1.872.955-2.8693.68434.107-3.6650.3782.7726.2444.86334.416
132AA_G54C55:G58C60_AA-1.3-0.7482.908-0.2554.9917.714-4.7083.9442.61715.7990.80918.4
12AA_U2A3:DT26DA27_CC-0.576-1.6883.242-1.94813.77630.834-4.9010.712.32924.4113.45233.758
16AA_U6C7:DG22DA23_CC0.376-0.7843.2716.3726.47836.55-2.050.2373.11210.137-9.97137.625
110AA_U10U11:DA18DA19_CC0.224-1.2353.3970.5196.12832.97-3.154-0.3033.12710.681-0.90433.523
111AA_U11U12:DA17DA18_CC-0.046-1.2823.3780.7063.76932.206-2.9660.2083.216.764-1.26832.428
112AA_U12G13:DC16DA17_CC0.556-1.2283.242-1.3086.47430.099-3.512-1.292.89512.2812.48230.799
114AA_U14A15:DT14DA15_CC-0.123-1.6413.2731.1669.84530.559-4.6040.4172.62518.09-2.14332.09
122AA_U22U23:A48A49_AA0.365-0.8513.0110.07.11434.257-2.377-0.6072.78411.9170.00134.966
123AA_U23U24:A47A48_AA-0.95-0.8183.914-2.21820.77133.48-4.0511.1092.98532.4343.46439.303
124AA_U24U25:A46A47_AA0.703-1.3173.0861.4622.96233.257-2.746-0.9982.9895.16-2.54733.416
125AA_U25A26:U45A46_AA-0.106-1.7652.974-0.38.40530.949-4.4690.1472.42415.3980.5532.044
128AA_U31A32:U37A38_AA0.123-2.083.125-1.09614.41428.796-5.849-0.3821.88926.9442.0532.152
136AA_U71U72:A77A78_AA0.989-2.2222.8378.08313.74529.73-5.555-0.6991.85924.681-14.51333.651
137AA_U72G73:A76A77_AA-2.219-0.5912.425-6.3860.76151.896-0.712.192.6530.8667.26652.266
139CC_DA2DA3:DT10DT11_DD-0.757-0.3363.5272.369-2.88434.238-0.0851.6753.484-4.881-4.00934.435
140CC_DA3DC5:DG8DT10_DD0.031-1.4656.454-2.1163.85964.806-1.681-0.2026.3643.5961.97264.939
138CC_DC1DA2:DT11DG12_DD0.176-0.323.1681.8612.11941.36-0.67-0.0573.1532.996-2.63141.452
141CC_DC5DG6:DC7DG8_DD0.55-0.4893.3751.9062.5534.552-1.223-0.6223.3574.282-3.234.694
143CC_DC7DA8:DT5DG6_DD0.541.3243.2192.2186.09234.8331.26-0.5543.42210.068-3.66535.413
142CC_DG6DC7:DG6DC7_DD-0.495-0.7843.1081.5466.52130.726-2.5741.1812.85712.127-2.87431.431

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.