A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 5HNF  PDB ID: 5HNF 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11L_DA103:DT209_M0.073-0.2380.1318.053-6.7394.104
19L_DA111:DT201_M0.154-0.1490.32715.003-15.4571.341
12L_DC104:DG208_M0.296-0.107-0.1515.678-18.259-0.927
13L_DC105:DG207_M0.129-0.0880.602-14.257-13.4530.781
14L_DC106:DG206_M0.083-0.0660.107-10.7522.7840.572
15L_DG107:DC205_M-0.15-0.1370.107-9.596-17.557-1.168
17L_DG109:DC203_M-0.224-0.145-0.1126.7545.032-1.625
18L_DG110:DC202_M-0.112-0.1320.12812.158-11.249-2.914
16L_DT108:DA204_M0.076-0.1180.139-11.456-3.5963.7

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.