A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 5HNF  PDB ID: 5HNF 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11LL_DA103DC104:DG208DT209_MM-0.6930.9363.0861.808-2.65435.5431.8841.3732.972-4.337-2.95535.683
12LL_DC104DC105:DG207DG208_MM0.197-0.8543.759-3.0284.47744.059-1.602-0.5793.6395.9414.01844.373
13LL_DC105DC106:DG206DG207_MM0.7130.5573.2654.184-0.56534.9711.005-0.5513.317-0.936-6.93135.217
14LL_DC106DG107:DC205DG206_MM-1.821.2393.338-3.784-1.21635.2372.2212.413.465-2.0016.22635.453
15LL_DG107DT108:DA204DC205_MM1.4140.4893.3890.795-4.00938.8531.23-2.0173.352-6.007-1.19139.059
17LL_DG109DG110:DC202DC203_MM-1.3170.7283.32-2.4880.11534.891.1931.8063.4050.1924.14334.976
18LL_DG110DA111:DT201DC202_MM0.519-0.2663.182-1.14-2.80238.764-0.068-0.9143.177-4.2131.71538.877
16LL_DT108DG109:DC203DA204_MM0.3660.7983.0522.741.1831.8691.247-0.1983.0982.143-4.97732.005

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.