A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: 5IIM  PDB ID: 5IIM 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12D_DC2:DG3_T0.194-0.0560.037-8.878-1.222-0.248
13D_DC3:DG2_T0.264-0.098-0.078-1.5552.17-0.34
11D_DG1:DC4_T-0.451-0.116-0.184-17.219-11.1140.357
14D_DG4:DC1_T-0.098-0.1340.3713.66-3.742-1.207
16P_DA2:DT10_T0.093-0.1020.036-5.17-10.563.474
19P_DA5:DT7_T0.165-0.1220.2175.617-16.051.192
110P_DA6:8OG6_T-0.0564.8020.182-3.437-10.402-83.138
15P_DC1:DG11_T0.164-0.1160.541-24.004-14.003-0.908
17P_DG3:DC9_T-0.1-0.1020.114-0.258-5.65-1.144
18P_DT4:DA8_T0.055-0.059-0.0873.53-5.7170.3

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.