A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
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NDB ID: 5IIM  PDB ID: 5IIM 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12DD_DC2DC3:DG2DG3_TT0.7790.2063.2063.7182.97734.604-0.105-0.7383.2754.975-6.21434.921
13DD_DC3DG4:DC1DG2_TT-0.980.3643.03-5.0192.13429.6080.2830.9073.1674.1329.71730.095
11DD_DG1DC2:DG3DC4_TT-0.538-0.8233.1851.0386.90136.184-2.1930.9852.96710.986-1.65236.828
15PP_DA2DG3:DC9DT10_TT0.176-0.4723.233-1.8992.22931.381-1.277-0.6723.1774.113.50231.514
18PP_DA5DA6:8OG6DT7_TT0.438-2.2213.161.160.66675.051-1.843-0.3263.1490.546-0.95275.061
14PP_DC1DA2:DT10DG11_TT-0.3320.7512.9833.95111.44230.905-0.511.2123.00120.512-7.08333.137
16PP_DG3DT4:DA8DC9_TT0.735-0.7363.2451.7055.84831.556-2.356-1.033.09610.629-3.132.124
17PP_DT4DA5:DT7DA8_TT0.603-0.8123.222-3.9218.96233.719-2.618-1.5572.83515.0616.58935.07

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.