A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 5IPN  PDB ID: 5IPN 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
121_DA28:DT35_2-0.3570.430.1364.154-8.07119.281
161_DA32:DT31_2-0.49-0.206-0.3156.07-17.36313.496
1131_DA54:DT9_20.145-0.595-1.0430.091-23.3380.401
111_DC27:DG36_2-1.0840.262-0.8786.957-6.8116.856
131_DC29:DG34_2-0.0460.540.37811.482-9.39822.345
181_DC35:DG28_2-0.0290.31-0.4559.0080.5883.019
1101_DC51:DG12_2-1.7840.332-1.34120.541-16.6155.286
1141_DC55:DG8_20.212-0.231-0.579-5.847-10.152.706
1161_DC57:DG6_2-0.3930.1090.82-8.119-17.5788.856
141_DG30:DC33_2-0.1440.3880.2144.667-11.78322.933
171_DG34:DC29_2-0.517-0.199-0.423-2.052-11.92914.052
1121_DG53:DC10_2-0.1210.765-0.422-0.487-16.9597.653
1151_DG56:DC7_2-0.5640.1790.779-5.476-7.7960.24
1171_DG58:DC5_2-1.0210.6890.307-9.295-11.4816.371
1181_DG59:DC4_20.4150.4430.8911.694-1.5-6.958
151_DT31:DA32_2-0.1860.1560.0153.783-11.01918.296
191_DT36:DA27_20.114-0.345-0.0360.746-21.2045.078
1111_DT52:DA11_20.0780.03-0.1569.516-18.5820.937
1192_DA13:U17_3-0.567-0.128-0.747-14.315-24.1364.956
1202_DC14:G16_30.7070.469-0.265-2.717-7.5811.475
1222_DC16:GTP14_3-0.0920.760.3482.113-25.63613.487
1212_DT15:A15_3-0.6430.164-0.89423.154-11.7577.368

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.