5IPN: Base Pair Morphology Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 5IPN PDB ID: 5IPN

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	1_DA28:DT35_2	-0.357	0.43	0.136	4.154	-8.071	19.281
1	6	1_DA32:DT31_2	-0.49	-0.206	-0.315	6.07	-17.363	13.496
1	13	1_DA54:DT9_2	0.145	-0.595	-1.043	0.091	-23.338	0.401
1	1	1_DC27:DG36_2	-1.084	0.262	-0.878	6.957	-6.811	6.856
1	3	1_DC29:DG34_2	-0.046	0.54	0.378	11.482	-9.398	22.345
1	8	1_DC35:DG28_2	-0.029	0.31	-0.455	9.008	0.588	3.019
1	10	1_DC51:DG12_2	-1.784	0.332	-1.341	20.541	-16.615	5.286
1	14	1_DC55:DG8_2	0.212	-0.231	-0.579	-5.847	-10.15	2.706
1	16	1_DC57:DG6_2	-0.393	0.109	0.82	-8.119	-17.578	8.856
1	4	1_DG30:DC33_2	-0.144	0.388	0.214	4.667	-11.783	22.933
1	7	1_DG34:DC29_2	-0.517	-0.199	-0.423	-2.052	-11.929	14.052
1	12	1_DG53:DC10_2	-0.121	0.765	-0.422	-0.487	-16.959	7.653
1	15	1_DG56:DC7_2	-0.564	0.179	0.779	-5.476	-7.796	0.24
1	17	1_DG58:DC5_2	-1.021	0.689	0.307	-9.295	-11.481	6.371
1	18	1_DG59:DC4_2	0.415	0.443	0.89	11.694	-1.5	-6.958
1	5	1_DT31:DA32_2	-0.186	0.156	0.015	3.783	-11.019	18.296
1	9	1_DT36:DA27_2	0.114	-0.345	-0.036	0.746	-21.204	5.078
1	11	1_DT52:DA11_2	0.078	0.03	-0.156	9.516	-18.582	0.937
1	19	2_DA13:U17_3	-0.567	-0.128	-0.747	-14.315	-24.136	4.956
1	20	2_DC14:G16_3	0.707	0.469	-0.265	-2.717	-7.581	1.475
1	22	2_DC16:GTP14_3	-0.092	0.76	0.348	2.113	-25.636	13.487
1	21	2_DT15:A15_3	-0.643	0.164	-0.894	23.154	-11.757	7.368

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.