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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
5IPN
PDB ID:
5IPN
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
2
1_DA28:DT35_2
-0.357
0.43
0.136
4.154
-8.071
19.281
1
6
1_DA32:DT31_2
-0.49
-0.206
-0.315
6.07
-17.363
13.496
1
13
1_DA54:DT9_2
0.145
-0.595
-1.043
0.091
-23.338
0.401
1
1
1_DC27:DG36_2
-1.084
0.262
-0.878
6.957
-6.811
6.856
1
3
1_DC29:DG34_2
-0.046
0.54
0.378
11.482
-9.398
22.345
1
8
1_DC35:DG28_2
-0.029
0.31
-0.455
9.008
0.588
3.019
1
10
1_DC51:DG12_2
-1.784
0.332
-1.341
20.541
-16.615
5.286
1
14
1_DC55:DG8_2
0.212
-0.231
-0.579
-5.847
-10.15
2.706
1
16
1_DC57:DG6_2
-0.393
0.109
0.82
-8.119
-17.578
8.856
1
4
1_DG30:DC33_2
-0.144
0.388
0.214
4.667
-11.783
22.933
1
7
1_DG34:DC29_2
-0.517
-0.199
-0.423
-2.052
-11.929
14.052
1
12
1_DG53:DC10_2
-0.121
0.765
-0.422
-0.487
-16.959
7.653
1
15
1_DG56:DC7_2
-0.564
0.179
0.779
-5.476
-7.796
0.24
1
17
1_DG58:DC5_2
-1.021
0.689
0.307
-9.295
-11.481
6.371
1
18
1_DG59:DC4_2
0.415
0.443
0.89
11.694
-1.5
-6.958
1
5
1_DT31:DA32_2
-0.186
0.156
0.015
3.783
-11.019
18.296
1
9
1_DT36:DA27_2
0.114
-0.345
-0.036
0.746
-21.204
5.078
1
11
1_DT52:DA11_2
0.078
0.03
-0.156
9.516
-18.582
0.937
1
19
2_DA13:U17_3
-0.567
-0.128
-0.747
-14.315
-24.136
4.956
1
20
2_DC14:G16_3
0.707
0.469
-0.265
-2.717
-7.581
1.475
1
22
2_DC16:GTP14_3
-0.092
0.76
0.348
2.113
-25.636
13.487
1
21
2_DT15:A15_3
-0.643
0.164
-0.894
23.154
-11.757
7.368
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.