A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
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NDB ID: 5J2H  PDB ID: 5J2H 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14T_DA4:DT2_D-0.2-0.0790.1735.503-5.416-0.633
110T_DA11:DT6_P0.2860.0060.159-1.63-10.1331.61
113T_DA14:DT3_P0.166-0.084-0.291-7.563-12.642-0.785
11T_DC1:DG5_D0.3450.1240.121-12.732-7.36-0.046
12T_DC2:DG4_D0.697-0.3210.0490.468-5.567-2.015
15T_DC5:DG1_D0.4-0.027-0.314.2466.457-0.939
17T_DC8:DG9_P0.245-0.323-0.651.801-4.368-0.08
19T_DC10:DG7_P0.166-0.2360.0872.807-9.321-4.424
112T_DC13:DG4_P0.477-0.2170.098-4.515-15.9463.717
115T_DC16:DG1_P0.97-0.4090.5687.673-9.6992.682
13T_DG3:DC3_D-0.709-0.2310.2051.095-19.3565.316
16T_DG7:DT10_P-2.8531.2340.387-8.37-22.45647.233
18T_DG9:DC8_P-0.444-0.252-0.0531.942-3.506-2.264
114T_DG15:DC2_P-0.266-0.1680.489.766-9.0051.917
111T_DT12:DA5_P0.1640.094-0.1083.797-9.5312.321

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.