A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
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NDB ID: 5J2H  PDB ID: 5J2H 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14TT_DA4DC5:DG1DT2_DD0.754-0.4993.1533.6274.84630.772-1.805-0.7353.1079.023-6.75331.347
19TT_DA11DT12:DA5DT6_PP0.142-0.8633.1812.637-0.59428.242-1.6280.3043.197-1.213-5.38928.369
112TT_DA14DG15:DC2DT3_PP0.266-0.0452.776-9.1485.87229.496-1.007-1.9312.52811.06917.24731.394
11TT_DC1DC2:DG4DG5_DD0.1190.5073.0292.1075.98330.881-0.1170.1513.07211.089-3.90531.51
12TT_DC2DG3:DC3DG4_DD0.0671.3433.367-3.4855.00633.031.456-0.723.5028.7126.06533.573
16TT_DC8DG9:DC8DG9_PP-1.4360.233.386-8.2966.61234.583-0.6511.0333.60610.81113.56636.127
18TT_DC10DA11:DT6DG7_PP0.08-0.3363.269-1.7057.14439.16-1.313-0.3133.15610.5462.51739.817
111TT_DC13DA14:DT3DG4_PP-0.3670.1043.4284.9439.68533.08-1.3741.4033.24316.465-8.40434.774
13TT_DG3DA4:DT2DC3_DD-0.093-0.1623.184-1.579-3.60735.9880.234-0.0683.186-5.8162.54636.196
15TT_DG7DC8:DG9DT10_PP-2.2360.1843.2272.661-0.5940.2380.3313.5333.076-0.856-3.86340.326
17TT_DG9DC10:DG7DC8_PP-0.497-0.5283.344-0.9773.2731.917-1.5520.7213.2885.9251.77132.094
113TT_DG15DC16:DG1DC2_PP0.43-0.7723.223-0.9275.72740.383-1.719-0.7163.0798.2441.33540.78
110TT_DT12DC13:DG4DA5_PP0.4690.0543.3640.5693.57439.696-0.346-0.623.3625.25-0.83639.854

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.