5KT6: Base Pair Morphology Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 5KT6 PDB ID: 5KT6

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	T_DC845:DG869_P	0.211	-0.145	-0.125	1.496	0.75	0.396
1	6	T_DC846:DG868_P	0.181	-0.156	0.133	-1.329	-2.233	0.688
1	1	T_DG841:DC873_P	-0.19	-0.161	-0.474	-3.342	0.186	0.602
1	2	T_DG842:DC872_P	-0.162	-0.098	-0.212	-5.765	0.008	-1.271
1	3	T_DG843:DC871_P	-0.18	-0.127	-0.072	-2.774	0.704	0.972
1	4	T_DT844:DA870_P	-0.051	-0.138	-0.228	1.237	0.572	2.954
1	7	T_DT847:DA867_P	-0.114	-0.164	0.078	-13.225	-9.035	6.314

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.