A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
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NDB ID: 5LUX  PDB ID: 5LUX 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
111AA_5CM11DG12:5CM25DG26_FF0.2880.5183.4540.83915.16533.201-1.48-0.3333.37424.978-1.38136.421
110AA_DA105CM11:DG26DT27_FF-0.52-0.8713.1275.269-0.38132.613-1.4721.7583.018-0.673-9.30633.027
113AA_DA13DC14:DG23DT24_FF0.536-0.4563.121.2185.24427.344-2.131-0.8373.00310.958-2.54427.859
114AA_DC14DC15:DG22DG23_FF0.223-1.0933.536-5.5848.39935.785-2.883-1.1263.1413.3468.87337.134
115AA_DC15DT16:DA21DG22_FF-1.31-0.7613.104-5.342-1.82331.259-1.0591.4243.314-3.359.81431.752
13AA_DG3DT4:DA33DC34_FF-0.31-0.5443.19-8.7565.93220.213-3.449-2.2752.81115.59923.02322.787
15AA_DG5DT6:DA31DC32_FF-0.213-0.8523.535-1.2953.21441.149-1.5780.1523.4664.5631.83941.289
112AA_DG12DA13:DT245CM25_FF-0.905-0.262.999-4.5786.45938.082-1.1190.8443.0029.776.92538.866
11AA_DT1DT2:DA35DA36_FF-0.2040.3082.53111.3531.40232.4910.3531.7042.3422.415-19.54934.395
12AA_DT2DG3:DC34DA35_FF0.2171.5893.943-10.1047.3146.1731.242-1.2664.0079.12712.61547.738
14AA_DT4DG5:DC32DA33_FF0.1420.1452.8293.7981.43833.5190.0470.292.8312.482-6.55533.757
16AA_DT6DT7:DA30DA31_FF-0.099-0.6633.0041.399-3.54436.255-0.6040.3393.047-5.675-2.2436.448
17AA_DT7DT8:DA29DA30_FF0.3230.0153.2883.354-5.46537.5040.725-0.0643.269-8.424-5.1738.029
18AA_DT8DT9:DA28DA29_FF-0.2270.1023.2570.858.47132.534-1.210.5323.17514.806-1.48633.6
19AA_DT9DA10:DT27DA28_FF0.862-0.4362.9786.8245.15433.022-1.505-0.4642.9918.883-11.76134.081
116AA_DT16DC17:DG20DA21_FF0.9090.5663.2876.511-4.66745.2221.136-0.5933.309-6.013-8.38945.889
126BB_5CM11DG12:5CM25DG26_EE0.1980.5093.471.05415.86433.123-1.59-0.1553.36626.042-1.7336.645
125BB_DA105CM11:DG26DT27_EE-0.496-0.8593.1225.348-0.18232.384-1.4911.7453.008-0.324-9.50932.812
128BB_DA13DC14:DG23DT24_EE0.524-0.4473.1181.3365.36527.008-2.178-0.7912.99611.336-2.82327.558
129BB_DC14DC15:DG22DG23_EE0.22-1.0793.544-5.0277.59335.649-2.794-1.0663.19612.168.0536.757
130BB_DC15DT16:DA21DG22_EE-1.296-0.7653.112-5.253-2.9331.155-0.8631.413.336-5.3939.66731.716
132BB_DC17DC18:DG19DG20_EE2.4352.3063.07913.6740.14842.4353.031-1.8813.6650.199-18.3344.487
118BB_DG3DT4:DA33DC34_EE-0.344-0.543.185-8.8076.019.994-3.502-2.2462.80915.90423.34422.631
120BB_DG5DT6:DA31DC32_EE-0.198-0.8563.526-1.3013.26640.709-1.6090.133.4544.6841.86640.854
127BB_DG12DA13:DT245CM25_EE-0.906-0.2573.005-4.5466.53338.095-1.1240.8473.0069.8786.87338.888
117BB_DT1DG3:DC34DA36_EE-0.6781.1256.790.075-0.63580.4830.9050.5296.782-0.492-0.05880.485
119BB_DT4DG5:DC32DA33_EE0.1590.1392.8184.1152.19132.555-0.0790.3282.823.883-7.29432.878
121BB_DT6DT7:DA30DA31_EE-0.068-0.6533.0021.822-3.24636.088-0.6280.3453.04-5.223-2.93236.273
122BB_DT7DT8:DA29DA30_EE0.3560.0353.2943.581-5.73637.7290.781-0.0893.273-8.783-5.48438.309
123BB_DT8DT9:DA28DA29_EE-0.2620.1043.2391.0927.92131.987-1.1560.6473.16314.1-1.94432.945
124BB_DT9DA10:DT27DA28_EE0.9-0.4232.956.3734.51932.886-1.4-0.62.9857.846-11.06433.776
131BB_DT16DC17:DG20DA21_EE0.9230.5973.3616.255-7.53146.3591.376-0.6253.322-9.443-7.84347.325

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.