5LUX: Base Pair Morphology Step Parameters

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As of 11-Dec-2019 number of released structures: 10507

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NDB ID: 5LUX PDB ID: 5LUX

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	11	AA_5CM11DG12:5CM25DG26_FF	0.288	0.518	3.454	0.839	15.165	33.201	-1.48	-0.333	3.374	24.978	-1.381	36.421
1	10	AA_DA105CM11:DG26DT27_FF	-0.52	-0.871	3.127	5.269	-0.381	32.613	-1.472	1.758	3.018	-0.673	-9.306	33.027
1	13	AA_DA13DC14:DG23DT24_FF	0.536	-0.456	3.12	1.218	5.244	27.344	-2.131	-0.837	3.003	10.958	-2.544	27.859
1	14	AA_DC14DC15:DG22DG23_FF	0.223	-1.093	3.536	-5.584	8.399	35.785	-2.883	-1.126	3.14	13.346	8.873	37.134
1	15	AA_DC15DT16:DA21DG22_FF	-1.31	-0.761	3.104	-5.342	-1.823	31.259	-1.059	1.424	3.314	-3.35	9.814	31.752
1	3	AA_DG3DT4:DA33DC34_FF	-0.31	-0.544	3.19	-8.756	5.932	20.213	-3.449	-2.275	2.811	15.599	23.023	22.787
1	5	AA_DG5DT6:DA31DC32_FF	-0.213	-0.852	3.535	-1.295	3.214	41.149	-1.578	0.152	3.466	4.563	1.839	41.289
1	12	AA_DG12DA13:DT245CM25_FF	-0.905	-0.26	2.999	-4.578	6.459	38.082	-1.119	0.844	3.002	9.77	6.925	38.866
1	1	AA_DT1DT2:DA35DA36_FF	-0.204	0.308	2.531	11.353	1.402	32.491	0.353	1.704	2.342	2.415	-19.549	34.395
1	2	AA_DT2DG3:DC34DA35_FF	0.217	1.589	3.943	-10.104	7.31	46.173	1.242	-1.266	4.007	9.127	12.615	47.738
1	4	AA_DT4DG5:DC32DA33_FF	0.142	0.145	2.829	3.798	1.438	33.519	0.047	0.29	2.831	2.482	-6.555	33.757
1	6	AA_DT6DT7:DA30DA31_FF	-0.099	-0.663	3.004	1.399	-3.544	36.255	-0.604	0.339	3.047	-5.675	-2.24	36.448
1	7	AA_DT7DT8:DA29DA30_FF	0.323	0.015	3.288	3.354	-5.465	37.504	0.725	-0.064	3.269	-8.424	-5.17	38.029
1	8	AA_DT8DT9:DA28DA29_FF	-0.227	0.102	3.257	0.85	8.471	32.534	-1.21	0.532	3.175	14.806	-1.486	33.6
1	9	AA_DT9DA10:DT27DA28_FF	0.862	-0.436	2.978	6.824	5.154	33.022	-1.505	-0.464	2.991	8.883	-11.761	34.081
1	16	AA_DT16DC17:DG20DA21_FF	0.909	0.566	3.287	6.511	-4.667	45.222	1.136	-0.593	3.309	-6.013	-8.389	45.889
1	26	BB_5CM11DG12:5CM25DG26_EE	0.198	0.509	3.47	1.054	15.864	33.123	-1.59	-0.155	3.366	26.042	-1.73	36.645
1	25	BB_DA105CM11:DG26DT27_EE	-0.496	-0.859	3.122	5.348	-0.182	32.384	-1.491	1.745	3.008	-0.324	-9.509	32.812
1	28	BB_DA13DC14:DG23DT24_EE	0.524	-0.447	3.118	1.336	5.365	27.008	-2.178	-0.791	2.996	11.336	-2.823	27.558
1	29	BB_DC14DC15:DG22DG23_EE	0.22	-1.079	3.544	-5.027	7.593	35.649	-2.794	-1.066	3.196	12.16	8.05	36.757
1	30	BB_DC15DT16:DA21DG22_EE	-1.296	-0.765	3.112	-5.253	-2.93	31.155	-0.863	1.41	3.336	-5.393	9.667	31.716
1	32	BB_DC17DC18:DG19DG20_EE	2.435	2.306	3.079	13.674	0.148	42.435	3.031	-1.881	3.665	0.199	-18.33	44.487
1	18	BB_DG3DT4:DA33DC34_EE	-0.344	-0.54	3.185	-8.807	6.0	19.994	-3.502	-2.246	2.809	15.904	23.344	22.631
1	20	BB_DG5DT6:DA31DC32_EE	-0.198	-0.856	3.526	-1.301	3.266	40.709	-1.609	0.13	3.454	4.684	1.866	40.854
1	27	BB_DG12DA13:DT245CM25_EE	-0.906	-0.257	3.005	-4.546	6.533	38.095	-1.124	0.847	3.006	9.878	6.873	38.888
1	17	BB_DT1DG3:DC34DA36_EE	-0.678	1.125	6.79	0.075	-0.635	80.483	0.905	0.529	6.782	-0.492	-0.058	80.485
1	19	BB_DT4DG5:DC32DA33_EE	0.159	0.139	2.818	4.115	2.191	32.555	-0.079	0.328	2.82	3.883	-7.294	32.878
1	21	BB_DT6DT7:DA30DA31_EE	-0.068	-0.653	3.002	1.822	-3.246	36.088	-0.628	0.345	3.04	-5.223	-2.932	36.273
1	22	BB_DT7DT8:DA29DA30_EE	0.356	0.035	3.294	3.581	-5.736	37.729	0.781	-0.089	3.273	-8.783	-5.484	38.309
1	23	BB_DT8DT9:DA28DA29_EE	-0.262	0.104	3.239	1.092	7.921	31.987	-1.156	0.647	3.163	14.1	-1.944	32.945
1	24	BB_DT9DA10:DT27DA28_EE	0.9	-0.423	2.95	6.373	4.519	32.886	-1.4	-0.6	2.985	7.846	-11.064	33.776
1	31	BB_DT16DC17:DG20DA21_EE	0.923	0.597	3.361	6.255	-7.531	46.359	1.376	-0.625	3.322	-9.443	-7.843	47.325

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.