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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID:
5LUX
PDB ID:
5LUX
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
11
AA_5CM11DG12:5CM25DG26_FF
0.288
0.518
3.454
0.839
15.165
33.201
-1.48
-0.333
3.374
24.978
-1.381
36.421
1
10
AA_DA105CM11:DG26DT27_FF
-0.52
-0.871
3.127
5.269
-0.381
32.613
-1.472
1.758
3.018
-0.673
-9.306
33.027
1
13
AA_DA13DC14:DG23DT24_FF
0.536
-0.456
3.12
1.218
5.244
27.344
-2.131
-0.837
3.003
10.958
-2.544
27.859
1
14
AA_DC14DC15:DG22DG23_FF
0.223
-1.093
3.536
-5.584
8.399
35.785
-2.883
-1.126
3.14
13.346
8.873
37.134
1
15
AA_DC15DT16:DA21DG22_FF
-1.31
-0.761
3.104
-5.342
-1.823
31.259
-1.059
1.424
3.314
-3.35
9.814
31.752
1
3
AA_DG3DT4:DA33DC34_FF
-0.31
-0.544
3.19
-8.756
5.932
20.213
-3.449
-2.275
2.811
15.599
23.023
22.787
1
5
AA_DG5DT6:DA31DC32_FF
-0.213
-0.852
3.535
-1.295
3.214
41.149
-1.578
0.152
3.466
4.563
1.839
41.289
1
12
AA_DG12DA13:DT245CM25_FF
-0.905
-0.26
2.999
-4.578
6.459
38.082
-1.119
0.844
3.002
9.77
6.925
38.866
1
1
AA_DT1DT2:DA35DA36_FF
-0.204
0.308
2.531
11.353
1.402
32.491
0.353
1.704
2.342
2.415
-19.549
34.395
1
2
AA_DT2DG3:DC34DA35_FF
0.217
1.589
3.943
-10.104
7.31
46.173
1.242
-1.266
4.007
9.127
12.615
47.738
1
4
AA_DT4DG5:DC32DA33_FF
0.142
0.145
2.829
3.798
1.438
33.519
0.047
0.29
2.831
2.482
-6.555
33.757
1
6
AA_DT6DT7:DA30DA31_FF
-0.099
-0.663
3.004
1.399
-3.544
36.255
-0.604
0.339
3.047
-5.675
-2.24
36.448
1
7
AA_DT7DT8:DA29DA30_FF
0.323
0.015
3.288
3.354
-5.465
37.504
0.725
-0.064
3.269
-8.424
-5.17
38.029
1
8
AA_DT8DT9:DA28DA29_FF
-0.227
0.102
3.257
0.85
8.471
32.534
-1.21
0.532
3.175
14.806
-1.486
33.6
1
9
AA_DT9DA10:DT27DA28_FF
0.862
-0.436
2.978
6.824
5.154
33.022
-1.505
-0.464
2.991
8.883
-11.761
34.081
1
16
AA_DT16DC17:DG20DA21_FF
0.909
0.566
3.287
6.511
-4.667
45.222
1.136
-0.593
3.309
-6.013
-8.389
45.889
1
26
BB_5CM11DG12:5CM25DG26_EE
0.198
0.509
3.47
1.054
15.864
33.123
-1.59
-0.155
3.366
26.042
-1.73
36.645
1
25
BB_DA105CM11:DG26DT27_EE
-0.496
-0.859
3.122
5.348
-0.182
32.384
-1.491
1.745
3.008
-0.324
-9.509
32.812
1
28
BB_DA13DC14:DG23DT24_EE
0.524
-0.447
3.118
1.336
5.365
27.008
-2.178
-0.791
2.996
11.336
-2.823
27.558
1
29
BB_DC14DC15:DG22DG23_EE
0.22
-1.079
3.544
-5.027
7.593
35.649
-2.794
-1.066
3.196
12.16
8.05
36.757
1
30
BB_DC15DT16:DA21DG22_EE
-1.296
-0.765
3.112
-5.253
-2.93
31.155
-0.863
1.41
3.336
-5.393
9.667
31.716
1
32
BB_DC17DC18:DG19DG20_EE
2.435
2.306
3.079
13.674
0.148
42.435
3.031
-1.881
3.665
0.199
-18.33
44.487
1
18
BB_DG3DT4:DA33DC34_EE
-0.344
-0.54
3.185
-8.807
6.0
19.994
-3.502
-2.246
2.809
15.904
23.344
22.631
1
20
BB_DG5DT6:DA31DC32_EE
-0.198
-0.856
3.526
-1.301
3.266
40.709
-1.609
0.13
3.454
4.684
1.866
40.854
1
27
BB_DG12DA13:DT245CM25_EE
-0.906
-0.257
3.005
-4.546
6.533
38.095
-1.124
0.847
3.006
9.878
6.873
38.888
1
17
BB_DT1DG3:DC34DA36_EE
-0.678
1.125
6.79
0.075
-0.635
80.483
0.905
0.529
6.782
-0.492
-0.058
80.485
1
19
BB_DT4DG5:DC32DA33_EE
0.159
0.139
2.818
4.115
2.191
32.555
-0.079
0.328
2.82
3.883
-7.294
32.878
1
21
BB_DT6DT7:DA30DA31_EE
-0.068
-0.653
3.002
1.822
-3.246
36.088
-0.628
0.345
3.04
-5.223
-2.932
36.273
1
22
BB_DT7DT8:DA29DA30_EE
0.356
0.035
3.294
3.581
-5.736
37.729
0.781
-0.089
3.273
-8.783
-5.484
38.309
1
23
BB_DT8DT9:DA28DA29_EE
-0.262
0.104
3.239
1.092
7.921
31.987
-1.156
0.647
3.163
14.1
-1.944
32.945
1
24
BB_DT9DA10:DT27DA28_EE
0.9
-0.423
2.95
6.373
4.519
32.886
-1.4
-0.6
2.985
7.846
-11.064
33.776
1
31
BB_DT16DC17:DG20DA21_EE
0.923
0.597
3.361
6.255
-7.531
46.359
1.376
-0.625
3.322
-9.443
-7.843
47.325
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.