A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 16-Oct-2019 number of released structures: 10422
Search for released structures

NDB ID: 5M3H  PDB ID: 5M3H 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
111R_A2:U3_R-0.008-0.3410.112-4.563-17.247-4.478
113R_A4:U1_R-0.135-0.1840.2523.007-10.3954.233
11R_C5:G15_V-0.229-0.1830.0729.029-9.783-5.357
12R_C6:G14_V0.044-0.2610.038.008-11.389-1.27
14R_C8:G12_V0.363-0.27-0.07-1.182-13.196-3.32
110R_U1:A4_R0.135-0.1840.252-3.007-10.3954.233
112R_U3:A2_R0.008-0.3410.1124.563-17.247-4.478
13R_U7:A13_V-0.275-0.066-0.0062.733-9.412-0.218
15R_U9:A11_V0.061-0.1360.42-3.532-9.5071.151
16V_A1:A10_V-7.155-3.471-0.215-3.631-2.251.661
19V_A4:A7_V5.881-1.179-1.90824.377-9.43636.501
17V_G2:C9_V-0.12-0.143-0.447.417-1.130.324
18V_U3:A8_V-0.014-0.172-0.2597.338-8.213-1.346

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.