A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 16-Oct-2019 number of released structures: 10422
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NDB ID: 5M3H  PDB ID: 5M3H 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
19RR_A2U3:A2U3_RR0.0-1.6573.0510.01.02131.098-3.2690.02.9961.9040.031.114
11RR_C5C6:G14G15_VV-0.018-2.1023.186-3.3534.46434.066-4.189-0.4552.8847.5565.67634.507
12RR_C6U7:A13G14_VV-0.548-2.2643.293-2.918.25427.467-6.2440.5052.56216.855.94128.802
14RR_C8U9:A11G12_VV0.698-1.5223.299-1.5648.69132.407-3.984-1.4512.77415.2222.73933.558
18RR_U1A2:U3A4_RR-0.475-1.7243.2130.4436.432.6-4.0160.92.82611.265-0.77933.208
110RR_U3A4:U1A2_RR0.475-1.7243.213-0.4436.432.6-4.016-0.92.82611.2650.77933.208
13RR_U7C8:G12A13_VV-0.574-1.5283.3070.388.9736.027-3.550.9512.85214.232-0.60337.093
15VV_A1G2:C9A10_VV0.162-0.7073.112-3.5048.55957.923-1.14-0.3362.9768.7763.59258.593
16VV_G2U3:A8C9_VV0.48-1.9673.5771.576-2.99429.784-3.107-0.5613.772-5.801-3.05429.971
17VV_U3A4:A7A8_VV2.830.0213.39313.559-9.11944.9620.874-2.2383.968-11.484-17.07747.694

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.