A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 16-Oct-2019 number of released structures: 10422
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NDB ID: 5M3J  PDB ID: 5M3J 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11R_C6:G14_V0.21-0.0920.2716.306-16.023-1.949
13R_C8:G12_V0.467-0.1530.180.267-19.3980.908
110R_U3:G14_V1.7626.815-0.31314.893-14.753145.268
19R_U3:G14_V1.7626.815-0.31314.893-14.753145.268
12R_U7:A13_V0.097-0.1590.0341.795-24.9926.548
14R_U9:A11_V0.5180.0290.3146.613-8.32610.069
15V_A1:A10_V-6.731-4.2940.632-3.789-13.083-14.718
18V_A4:A7_V6.372-0.798-1.45916.887-6.44447.307
16V_G2:C9_V0.092-0.014-0.587-0.47-18.6760.541
17V_U3:A8_V0.042-0.038-0.60215.377-17.7613.387

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.