A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 16-Oct-2019 number of released structures: 10422
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NDB ID: 5M3J  PDB ID: 5M3J 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11RR_C6U7:A13G14_VV0.567-1.1883.4551.7579.00433.925-3.339-0.6733.07415.091-2.94635.108
13RR_C8U9:A11G12_VV0.851-1.6483.0951.3795.29131.553-3.859-1.3172.8229.64-2.51232.012
12RR_U7C8:G12A13_VV-0.49-0.9683.409-1.4726.31634.515-2.5690.5883.20510.5292.45435.101
14VV_A1G2:C9A10_VV1.643-0.4583.556.17612.79161.187-1.075-1.2733.53712.387-5.98162.658
15VV_G2U3:A8C9_VV0.764-1.0442.9551.971.57429.68-2.328-1.1152.943.066-3.83729.785
16VV_U3A4:A7A8_VV3.2280.3333.7047.641-2.85149.4930.641-3.1484.104-3.378-9.05650.119

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.