5MCT: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 31-May-2023 number of released structures: 12820

Search for released structures

NDB ID: 5MCT PDB ID: 5MCT

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	C_DC4:DG17_C	0.236	-0.157	0.028	-2.536	-8.788	-0.513
1	8	C_DC8:DG13_C	0.145	-0.217	-0.243	5.308	-6.15	-1.531
1	9	C_DC9:DG12_C	0.201	-0.193	0.017	0.443	-10.194	-2.442
1	10	C_DC10:DG11_C	0.143	-0.138	0.329	-9.792	-6.073	0.852
1	14	C_DC14:DG7_C	0.242	-0.148	0.028	-1.734	-8.417	-0.119
1	18	C_DC18:DG3_C	0.112	-0.219	-0.275	6.166	-6.864	-1.507
1	19	C_DC19:DG2_C	0.184	-0.2	-0.014	0.387	-10.97	-2.227
1	20	C_DC20:DG1_C	0.151	-0.126	0.368	-10.975	-6.316	0.852
1	1	C_DG1:DC20_C	-0.151	-0.126	0.368	10.975	-6.316	0.852
1	2	C_DG2:DC19_C	-0.184	-0.2	-0.014	-0.387	-10.97	-2.227
1	3	C_DG3:DC18_C	-0.112	-0.219	-0.275	-6.166	-6.864	-1.507
1	7	C_DG7:DC14_C	-0.242	-0.148	0.028	1.734	-8.417	-0.119
1	11	C_DG11:DC10_C	-0.143	-0.138	0.329	9.792	-6.073	0.852
1	12	C_DG12:DC9_C	-0.201	-0.193	0.017	-0.443	-10.194	-2.442
1	13	C_DG13:DC8_C	-0.145	-0.217	-0.243	-5.308	-6.15	-1.531
1	17	C_DG17:DC4_C	-0.236	-0.157	0.028	2.536	-8.788	-0.513
1	6	C_DT6:IGU15_C	-0.63	3.618	0.42	-14.378	-3.292	-67.411
1	16	C_DT16:IGU5_C	-0.656	3.633	0.377	-13.266	-4.128	-67.605
1	5	C_IGU5:DT16_C	0.656	-3.633	-0.377	13.266	4.128	67.605
1	15	C_IGU15:DT6_C	0.63	-3.618	-0.42	14.378	3.292	67.411

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.