5MCT: Base Pair Morphology Step Parameters

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NDB ID: 5MCT PDB ID: 5MCT

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	CC_DC4IGU5:DT16DG17_CC	2.045	-3.393	3.156	-173.624	-4.557	57.747	-1.676	-1.901	-0.186	-2.321	88.443	174.47
1	8	CC_DC8DC9:DG12DG13_CC	-1.043	-0.232	3.496	-4.153	1.386	34.423	-0.62	1.057	3.582	2.33	6.983	34.692
1	9	CC_DC9DC10:DG11DG12_CC	0.707	-0.535	3.517	-0.253	2.174	36.533	-1.172	-1.164	3.476	3.465	0.402	36.596
1	10	CC_DC10DG11:DC10DG11_CC	0.0	0.92	3.042	0.0	5.622	30.453	0.686	0.0	3.157	10.588	0.0	30.956
1	14	CC_DC14IGU15:DT6DG7_CC	2.09	-3.396	3.112	-173.635	-4.341	60.131	-1.679	-1.893	-0.174	-2.21	88.39	174.539
1	18	CC_DC18DC19:DG2DG3_CC	-1.028	-0.205	3.524	-4.15	1.32	34.528	-0.564	1.026	3.61	2.213	6.957	34.794
1	19	CC_DC19DC20:DG1DG2_CC	0.732	-0.525	3.544	-0.786	2.441	36.567	-1.194	-1.28	3.487	3.885	1.251	36.654
1	1	CC_DG1DG2:DC19DC20_CC	-0.732	-0.525	3.544	0.786	2.441	36.567	-1.194	1.28	3.487	3.885	-1.251	36.654
1	2	CC_DG2DG3:DC18DC19_CC	1.028	-0.205	3.524	4.15	1.32	34.528	-0.564	-1.026	3.61	2.213	-6.957	34.794
1	3	CC_DG3DC4:DG17DC18_CC	-0.812	-0.194	3.258	-3.459	-0.167	36.166	-0.288	0.817	3.319	-0.268	5.556	36.325
1	7	CC_DG7DC8:DG13DC14_CC	0.805	-0.208	3.258	3.145	-0.455	36.414	-0.268	-0.848	3.316	-0.727	-5.02	36.548
1	11	CC_DG11DG12:DC9DC10_CC	-0.707	-0.535	3.517	0.253	2.174	36.533	-1.172	1.164	3.476	3.465	-0.402	36.596
1	12	CC_DG12DG13:DC8DC9_CC	1.043	-0.232	3.496	4.153	1.386	34.423	-0.62	-1.057	3.582	2.33	-6.983	34.692
1	13	CC_DG13DC14:DG7DC8_CC	-0.805	-0.208	3.258	-3.145	-0.455	36.414	-0.268	0.848	3.316	-0.727	5.02	36.548
1	17	CC_DG17DC18:DG3DC4_CC	0.812	-0.194	3.258	3.459	-0.167	36.166	-0.288	-0.817	3.319	-0.268	-5.556	36.325
1	6	CC_DT6DG7:DC14IGU15_CC	-0.176	3.697	3.447	-5.461	3.161	2.864	12.707	-29.432	3.251	32.871	56.783	6.929
1	16	CC_DT16DG17:DC4IGU5_CC	-0.188	3.708	3.446	-5.531	3.05	3.007	13.667	-28.784	3.247	31.179	56.543	6.995
1	5	CC_IGU5DT6:IGU15DT16_CC	-1.794	-3.035	0.003	95.55	-130.763	179.813	-1.518	0.897	0.005	-65.382	-47.775	179.971
1	15	CC_IGU15DT16:IGU5DT6_CC	1.794	3.035	-0.003	-95.55	130.763	-179.813	-1.518	0.897	-0.005	-65.382	-47.775	-179.971

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.