A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 5MCU  PDB ID: 5MCU 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14C_DC4:DG17_C0.179-0.1590.001-1.79-7.317-1.344
18C_DC8:DG13_C0.203-0.169-0.3318.496-5.525-1.335
19C_DC9:DG12_C0.297-0.196-0.0092.314-12.685-1.688
110C_DC10:DG11_C0.074-0.1380.411-10.425-6.3551.294
114C_DC14:DG7_C0.139-0.1420.029-2.176-8.455-0.816
118C_DC18:DG3_C0.185-0.202-0.3549.719-6.356-1.643
119C_DC19:DG2_C0.253-0.1890.0171.88-12.802-1.756
120C_DC20:DG1_C0.12-0.1510.445-10.928-7.5161.129
11C_DG1:DC20_C-0.12-0.1510.44510.928-7.5161.129
12C_DG2:DC19_C-0.253-0.1890.017-1.88-12.802-1.756
13C_DG3:DC18_C-0.185-0.202-0.354-9.719-6.356-1.643
17C_DG7:DC14_C-0.139-0.1420.0292.176-8.455-0.816
111C_DG11:DC10_C-0.074-0.1380.41110.425-6.3551.294
112C_DG12:DC9_C-0.297-0.196-0.009-2.314-12.685-1.688
113C_DG13:DC8_C-0.203-0.169-0.331-8.496-5.525-1.335
117C_DG17:DC4_C-0.179-0.1590.0011.79-7.317-1.344
16C_DT6:IGU15_C-0.6263.6450.549-15.512-1.381-67.993
116C_DT16:IGU5_C-0.6363.6190.504-15.62-0.639-68.095
15C_IGU5:DT16_C0.636-3.619-0.50415.620.63968.095
115C_IGU15:DT6_C0.626-3.645-0.54915.5121.38167.993

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.