5MCU: Base Pair Morphology Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 5MCU PDB ID: 5MCU

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	C_DC4:DG17_C	0.179	-0.159	0.001	-1.79	-7.317	-1.344
1	8	C_DC8:DG13_C	0.203	-0.169	-0.331	8.496	-5.525	-1.335
1	9	C_DC9:DG12_C	0.297	-0.196	-0.009	2.314	-12.685	-1.688
1	10	C_DC10:DG11_C	0.074	-0.138	0.411	-10.425	-6.355	1.294
1	14	C_DC14:DG7_C	0.139	-0.142	0.029	-2.176	-8.455	-0.816
1	18	C_DC18:DG3_C	0.185	-0.202	-0.354	9.719	-6.356	-1.643
1	19	C_DC19:DG2_C	0.253	-0.189	0.017	1.88	-12.802	-1.756
1	20	C_DC20:DG1_C	0.12	-0.151	0.445	-10.928	-7.516	1.129
1	1	C_DG1:DC20_C	-0.12	-0.151	0.445	10.928	-7.516	1.129
1	2	C_DG2:DC19_C	-0.253	-0.189	0.017	-1.88	-12.802	-1.756
1	3	C_DG3:DC18_C	-0.185	-0.202	-0.354	-9.719	-6.356	-1.643
1	7	C_DG7:DC14_C	-0.139	-0.142	0.029	2.176	-8.455	-0.816
1	11	C_DG11:DC10_C	-0.074	-0.138	0.411	10.425	-6.355	1.294
1	12	C_DG12:DC9_C	-0.297	-0.196	-0.009	-2.314	-12.685	-1.688
1	13	C_DG13:DC8_C	-0.203	-0.169	-0.331	-8.496	-5.525	-1.335
1	17	C_DG17:DC4_C	-0.179	-0.159	0.001	1.79	-7.317	-1.344
1	6	C_DT6:IGU15_C	-0.626	3.645	0.549	-15.512	-1.381	-67.993
1	16	C_DT16:IGU5_C	-0.636	3.619	0.504	-15.62	-0.639	-68.095
1	5	C_IGU5:DT16_C	0.636	-3.619	-0.504	15.62	0.639	68.095
1	15	C_IGU15:DT6_C	0.626	-3.645	-0.549	15.512	1.381	67.993

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.