5MCU: Base Pair Morphology Step Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 5MCU PDB ID: 5MCU

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	CC_DC4IGU5:DT16DG17_CC	2.255	-3.348	3.132	-173.43	-3.392	62.281	-1.66	-1.942	-0.251	-1.727	88.292	174.406
1	8	CC_DC8DC9:DG12DG13_CC	-0.993	-0.246	3.505	-4.256	0.647	35.124	-0.509	0.951	3.592	1.067	7.019	35.379
1	9	CC_DC9DC10:DG11DG12_CC	0.609	-0.693	3.576	-1.648	3.336	36.851	-1.575	-1.197	3.472	5.26	2.599	37.031
1	10	CC_DC10DG11:DC10DG11_CC	0.0	0.456	2.939	0.0	5.223	30.335	-0.07	0.0	2.974	9.889	0.0	30.771
1	14	CC_DC14IGU15:DT6DG7_CC	2.308	-3.299	3.087	-174.012	-4.726	63.354	-1.63	-1.943	-0.264	-2.401	88.411	174.959
1	18	CC_DC18DC19:DG2DG3_CC	-0.988	-0.248	3.562	-4.698	0.92	35.016	-0.559	0.858	3.652	1.52	7.762	35.332
1	19	CC_DC19DC20:DG1DG2_CC	0.622	-0.704	3.568	-1.656	3.084	37.647	-1.515	-1.19	3.472	4.766	2.56	37.804
1	1	CC_DG1DG2:DC19DC20_CC	-0.622	-0.704	3.568	1.656	3.084	37.647	-1.515	1.19	3.472	4.766	-2.56	37.804
1	2	CC_DG2DG3:DC18DC19_CC	0.988	-0.248	3.562	4.698	0.92	35.016	-0.559	-0.858	3.652	1.52	-7.762	35.332
1	3	CC_DG3DC4:DG17DC18_CC	-0.858	-0.127	3.13	-3.474	0.095	35.045	-0.223	0.917	3.197	0.158	5.752	35.212
1	7	CC_DG7DC8:DG13DC14_CC	0.862	-0.124	3.195	2.913	0.284	34.844	-0.248	-1.001	3.254	0.472	-4.854	34.962
1	11	CC_DG11DG12:DC9DC10_CC	-0.609	-0.693	3.576	1.648	3.336	36.851	-1.575	1.197	3.472	5.26	-2.599	37.031
1	12	CC_DG12DG13:DC8DC9_CC	0.993	-0.246	3.505	4.256	0.647	35.124	-0.509	-0.951	3.592	1.067	-7.019	35.379
1	13	CC_DG13DC14:DG7DC8_CC	-0.862	-0.124	3.195	-2.913	0.284	34.844	-0.248	1.001	3.254	0.472	4.854	34.962
1	17	CC_DG17DC18:DG3DC4_CC	0.858	-0.127	3.13	3.474	0.095	35.045	-0.223	-0.917	3.197	0.158	-5.752	35.212
1	6	CC_DT6DG7:DC14IGU15_CC	-0.266	3.792	3.36	-5.042	3.111	3.112	13.768	-28.057	3.526	32.723	53.031	6.691
1	16	CC_DT16DG17:DC4IGU5_CC	-0.253	3.813	3.392	-5.595	3.38	2.241	11.525	-31.177	3.171	36.767	60.853	6.91
1	5	CC_IGU5DT6:IGU15DT16_CC	-1.951	-3.033	-0.023	92.951	-129.806	176.896	-1.517	0.975	0.013	-64.906	-46.478	179.452
1	15	CC_IGU15DT16:IGU5DT6_CC	1.951	3.033	0.023	-92.951	129.806	-176.896	-1.517	0.975	-0.013	-64.906	-46.478	-179.452

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.