A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
Search for released structures

NDB ID: 5MF0  PDB ID: 5MF0 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11EE_DA1DC2:DG15DT16_FF-0.4180.2983.67-0.937-3.6737.2231.0040.5143.635-5.7311.46337.408
12EE_DC2DG3:DC14DG15_FF0.8620.0162.9282.56119.08923.33-3.535-1.1772.35739.648-5.3230.168
16EE_DC6DC7:DG10DG11_FF-0.7510.2343.0778.422-3.25940.1270.6581.9092.843-4.678-12.08941.09
17EE_DC7DG8:DC9DG10_FF-1.3710.5343.828-7.92220.51533.775-2.1980.8493.76931.5112.16840.128
19EE_DC9DG10:DC7DG8_FF-0.3290.6853.353-2.3768.01932.211-0.2170.1573.43414.1584.19533.251
112EE_DC12DC13:DG4DG5_FF-0.240.1442.6643.0876.57329.08-0.8290.9842.59512.839-6.0329.954
113EE_DC13DC14:DG3DG4_FF0.0860.1423.392.047-1.01532.5140.4360.2163.383-1.81-3.6532.592
114EE_DC14DG15:DC2DG3_FF0.2640.0272.8392.10915.95419.59-4.017-0.0632.24439.383-5.20625.303
13EE_DG3DG4:DC13DC14_FF0.2340.3983.4412.5211.6839.6170.379-0.0353.4622.474-3.71339.728
14EE_DG4DG5:DC12DC13_FF0.27-0.12.927-10.662.40527.737-0.637-2.492.6294.78921.22229.773
15EE_DG5DC6:DG11DC12_FF0.138-0.2162.86-0.02910.88733.27-1.783-0.2342.66118.4110.04834.958
18EE_DG8DC9:DG8DC9_FF0.8471.0452.8570.123-7.50442.0932.072-1.1522.643-10.349-0.16942.727
110EE_DG10DG11:DC6DC7_FF0.4460.4953.137-1.4211.77230.991-1.086-1.0193.09221.0892.54433.13
111EE_DG11DC12:DG5DC6_FF0.063-0.0723.647-2.754-1.73147.8450.063-0.323.638-2.1323.39147.949
115EE_DG15DT16:DA1DC2_FF-2.0123.2851.481168.196-4.632-132.417-1.633-0.6212.2012.3384.594-175.271

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.