5MG7: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: 5MG7 PDB ID: 5MG7

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	C_DA3:DT18_C	0.242	-0.411	-0.066	5.166	-2.537	-7.724
1	4	C_DA5:DT16_C	0.587	-3.596	-0.139	5.133	7.806	68.217
1	10	C_DA11:DC10_C	0.121	-0.135	0.347	9.467	-5.443	2.108
1	14	C_DA15:DT6_C	0.589	-3.552	-0.106	5.062	9.316	68.571
1	3	C_DC4:DG17_C	0.131	-0.093	-0.161	-0.203	-9.013	2.532
1	7	C_DC8:DG13_C	0.011	-0.291	-0.053	-6.615	-5.036	-3.106
1	8	C_DC9:DG12_C	0.28	-0.145	0.115	-3.713	-13.916	1.649
1	9	C_DC10:DA11_C	-0.121	-0.135	0.347	-9.467	-5.443	2.108
1	13	C_DC14:DG7_C	0.216	-0.138	-0.079	-1.302	-15.138	1.813
1	18	C_DC19:DG2_C	0.163	-0.307	0.34	-11.861	-11.918	-0.501
1	1	C_DG2:DC19_C	-0.163	-0.307	0.34	11.861	-11.918	-0.501
1	6	C_DG7:DC14_C	-0.216	-0.138	-0.079	1.302	-15.138	1.813
1	11	C_DG12:DC9_C	-0.28	-0.145	0.115	3.713	-13.916	1.649
1	12	C_DG13:DC8_C	-0.011	-0.291	-0.053	6.615	-5.036	-3.106
1	16	C_DG17:DC4_C	-0.131	-0.093	-0.161	0.203	-9.013	2.532
1	5	C_DT6:DA15_C	-0.589	3.552	0.106	-5.062	-9.316	-68.571
1	15	C_DT16:DA5_C	-0.587	3.596	0.139	-5.133	-7.806	-68.217
1	17	C_DT18:DA3_C	-0.242	-0.411	-0.066	-5.166	-2.537	-7.724

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.