A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
Search for released structures

NDB ID: 5MG7  PDB ID: 5MG7 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12C_DA3:DT18_C0.242-0.411-0.0665.166-2.537-7.724
14C_DA5:DT16_C0.587-3.596-0.1395.1337.80668.217
110C_DA11:DC10_C0.121-0.1350.3479.467-5.4432.108
114C_DA15:DT6_C0.589-3.552-0.1065.0629.31668.571
13C_DC4:DG17_C0.131-0.093-0.161-0.203-9.0132.532
17C_DC8:DG13_C0.011-0.291-0.053-6.615-5.036-3.106
18C_DC9:DG12_C0.28-0.1450.115-3.713-13.9161.649
19C_DC10:DA11_C-0.121-0.1350.347-9.467-5.4432.108
113C_DC14:DG7_C0.216-0.138-0.079-1.302-15.1381.813
118C_DC19:DG2_C0.163-0.3070.34-11.861-11.918-0.501
11C_DG2:DC19_C-0.163-0.3070.3411.861-11.918-0.501
16C_DG7:DC14_C-0.216-0.138-0.0791.302-15.1381.813
111C_DG12:DC9_C-0.28-0.1450.1153.713-13.9161.649
112C_DG13:DC8_C-0.011-0.291-0.0536.615-5.036-3.106
116C_DG17:DC4_C-0.131-0.093-0.1610.203-9.0132.532
15C_DT6:DA15_C-0.5893.5520.106-5.062-9.316-68.571
115C_DT16:DA5_C-0.5873.5960.139-5.133-7.806-68.217
117C_DT18:DA3_C-0.242-0.411-0.066-5.166-2.537-7.724

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.