5MG7: Base Pair Morphology Step Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: 5MG7 PDB ID: 5MG7

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	CC_DA3DC4:DG17DT18_CC	0.026	-0.585	3.501	1.888	-2.265	34.873	-0.606	0.263	3.527	-3.771	-3.143	34.993
1	4	CC_DA5DT6:DA15DT16_CC	1.309	3.181	0.026	-100.281	131.927	-176.579	-1.591	0.654	-0.025	-65.966	-50.143	-179.575
1	10	CC_DA11DG12:DC9DC10_CC	-0.591	-0.322	3.435	2.155	4.656	31.891	-1.436	1.46	3.31	8.405	-3.891	32.29
1	14	CC_DA15DT16:DA5DT6_CC	-1.309	-3.181	-0.026	100.281	-131.927	176.579	-1.591	0.654	0.025	-65.966	-50.143	179.575
1	3	CC_DC4DA5:DT16DG17_CC	3.202	-3.421	1.426	-172.549	-4.131	119.371	-1.708	-1.749	-0.34	-2.078	86.779	176.266
1	7	CC_DC8DC9:DG12DG13_CC	-0.687	-0.122	3.231	-1.097	1.857	33.44	-0.513	1.014	3.24	3.223	1.904	33.507
1	8	CC_DC9DC10:DA11DG12_CC	0.591	-0.322	3.435	-2.155	4.656	31.891	-1.436	-1.46	3.31	8.405	3.891	32.29
1	9	CC_DC10DA11:DC10DA11_CC	0.0	1.305	3.055	0.0	-0.02	38.108	2.001	0.0	3.054	-0.03	0.0	38.108
1	13	CC_DC14DA15:DT6DG7_CC	2.75	-3.543	2.15	-175.404	-3.911	92.709	-1.764	-1.749	-0.286	-1.97	88.33	176.858
1	1	CC_DG2DA3:DT18DC19_CC	0.665	-0.243	3.483	3.835	-0.808	36.284	-0.268	-0.492	3.537	-1.293	-6.137	36.488
1	6	CC_DG7DC8:DG13DC14_CC	0.418	-0.36	3.59	1.05	-2.969	40.144	-0.152	-0.476	3.616	-4.318	-1.526	40.262
1	11	CC_DG12DG13:DC8DC9_CC	0.687	-0.122	3.231	1.097	1.857	33.44	-0.513	-1.014	3.24	3.223	-1.904	33.507
1	12	CC_DG13DC14:DG7DC8_CC	-0.418	-0.36	3.59	-1.05	-2.969	40.144	-0.152	0.476	3.616	-4.318	1.526	40.262
1	16	CC_DG17DT18:DA3DC4_CC	-0.026	-0.585	3.501	-1.888	-2.265	34.873	-0.606	-0.263	3.527	-3.771	3.143	34.993
1	5	CC_DT6DG7:DC14DA15_CC	-0.287	3.416	3.604	-3.142	3.294	2.555	1.715	-30.99	4.092	43.936	41.906	5.22
1	15	CC_DT16DG17:DC4DA5_CC	-0.343	3.412	3.496	-3.736	6.389	2.743	-8.527	-16.989	4.14	60.164	35.177	7.893
1	17	CC_DT18DC19:DG2DA3_CC	-0.665	-0.243	3.483	-3.835	-0.808	36.284	-0.268	0.492	3.537	-1.293	6.137	36.488

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.