A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5N6I  PDB ID: 5N6I 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12G_DA3:DT37_H-0.198-0.1640.1066.658-0.178-1.557
16G_DA7:DT33_H-0.533-0.252-0.0872.817-5.1-0.023
19G_DA10:DT30_H1.09-0.2610.423-5.0661.573-0.398
113G_DA14:DT26_H-0.186-0.1530.2064.967-6.3152.0
117G_DA18:DT22_H0.029-0.137-0.017-7.5364.272-1.118
120G_DA21:DT19_H0.227-0.105-0.0695.6657.3810.254
124G_DA25:DT15_H0.511-0.137-0.106-0.83-8.3960.454
130G_DA31:DT9_H-0.071-0.1830.363.568-4.086-0.153
132G_DA33:DT7_H0.303-0.1090.227-3.76-5.5020.621
135G_DA36:DT4_H0.742-0.129-0.119-3.5357.473-0.825
14G_DC5:DG35_H0.347-0.1410.1622.379-3.618-1.476
17G_DC8:DG32_H0.179-0.114-0.055-1.042-6.352-0.199
115G_DC16:DG24_H-0.148-0.0380.012-7.26-6.436-0.479
121G_DC22:DG18_H-0.064-0.046-0.1829.1813.752-0.776
126G_DC27:DG13_H0.65-0.2220.081-4.582-4.287-0.682
131G_DC32:DG8_H0.605-0.2070.202-0.063-6.414-0.349
11G_DG2:DC38_H-1.434-0.6470.1216.8944.912-1.345
110G_DG11:DC29_H0.547-0.1160.535-2.8723.9550.429
112G_DG13:DC27_H0.351-0.0520.3765.483-1.828-0.223
119G_DG20:DC20_H-0.726-0.2310.0610.5148.731-0.917
123G_DG24:DC16_H-0.348-0.125-0.1224.393-6.059-0.421
128G_DG29:DC11_H0.119-0.0780.515-0.1823.3491.027
134G_DG35:DC5_H-0.609-0.2110.056-6.8732.952-0.593
13G_DT4:DA36_H-0.358-0.1180.0695.363-2.897-0.647
15G_DT6:DA34_H-0.204-0.130.2462.119-2.41-0.334
18G_DT9:DA31_H0.075-0.1360.198-4.98-1.8560.233
111G_DT12:DA28_H0.194-0.1920.461.4324.9222.079
114G_DT15:DA25_H-0.569-0.0990.009-0.156-9.7450.209
116G_DT17:DA23_H0.023-0.0930.119-10.238-0.411.127
118G_DT19:DA21_H-0.148-0.103-0.015-4.2026.772-1.358
122G_DT23:DA17_H-0.043-0.096-0.0938.959-0.338-0.68
125G_DT26:DA14_H-0.544-0.152-0.006-2.677-7.360.505
127G_DT28:DA12_H0.118-0.1660.334-2.953-0.6113.429
129G_DT30:DA10_H-0.131-0.1590.5862.6392.34-0.105
133G_DT34:DA6_H0.238-0.1730.192-6.114-2.571-0.317
136G_DT37:DA3_H0.632-0.308-0.4192.3738.2220.696
138I_DA3:DT37_J-0.706-0.324-0.1444.8396.723-0.264
142I_DA7:DT33_J-0.253-0.182-0.1310.966-4.5991.121
145I_DA10:DT30_J0.585-0.2560.695-5.5835.6614.243
149I_DA14:DT26_J-0.005-0.131-0.0153.231-5.7921.379
153I_DA18:DT22_J-0.205-0.194-0.156-9.74814.252-0.968
156I_DA21:DT19_J-0.058-0.186-0.4017.59110.3960.408
160I_DA25:DT15_J0.432-0.143-0.116-0.427-6.1381.341
166I_DA31:DT9_J-0.074-0.1870.4773.636-2.281.098
168I_DA33:DT7_J0.268-0.1610.249-5.142-5.0462.073
171I_DA36:DT4_J0.997-0.212-0.368-0.94312.368-1.32
140I_DC5:DG35_J0.186-0.105-0.1435.259-2.575-1.57
143I_DC8:DG32_J0.662-0.217-0.043-2.895-5.155-0.313
151I_DC16:DG24_J0.145-0.091-0.057-9.642-3.334-1.246
157I_DC22:DG18_J-0.252-0.07-0.49110.7275.307-0.894
162I_DC27:DG13_J0.55-0.1970.245-3.535-1.06-0.114
167I_DC32:DG8_J0.733-0.2620.290.681-5.2310.294
137I_DG2:DC38_J-1.774-0.959-0.188-2.88610.788-0.089
146I_DG11:DC29_J0.445-0.140.672-1.9456.6032.674
148I_DG13:DC27_J0.131-0.0820.2756.2291.604-0.769
155I_DG20:DC20_J-0.956-0.381-0.0542.60513.089-0.89
159I_DG24:DC16_J-0.484-0.171-0.1244.468-3.384-0.683
164I_DG29:DC11_J0.151-0.1020.4730.5022.929-0.091
170I_DG35:DC5_J-0.486-0.177-0.213-8.1745.812-1.355
139I_DT4:DA36_J-0.587-0.094-0.2226.9632.221-0.438
141I_DT6:DA34_J-0.258-0.13-0.0223.477-3.443-0.192
144I_DT9:DA31_J0.833-0.3750.315-8.087-0.956-0.442
147I_DT12:DA28_J-0.103-0.1810.5292.9616.5723.122
150I_DT15:DA25_J-0.333-0.115-0.192-2.113-8.052-0.805
152I_DT17:DA23_J0.514-0.2340.154-11.7965.018-0.66
154I_DT19:DA21_J0.12-0.187-0.223-1.19916.703-1.063
158I_DT23:DA17_J-0.17-0.1-0.269.7851.4-0.323
161I_DT26:DA14_J-0.581-0.1350.02-1.904-4.8562.14
163I_DT28:DA12_J0.056-0.1950.508-1.3052.7092.428
165I_DT30:DA10_J-0.184-0.2030.5282.7320.268-0.273
169I_DT34:DA6_J0.291-0.1550.176-7.563-1.1630.813
172I_DT37:DA3_J0.543-0.315-0.5578.31312.944-2.032
174K_DA21:DT19_L0.336-0.172-0.4675.2947.34-1.801
178K_DA25:DT15_L0.446-0.133-0.194-0.5-6.5351.199
184K_DA31:DT9_L-0.052-0.1530.4083.423-2.9890.428
186K_DA33:DT7_L0.303-0.1660.372-4.63-5.611.515
189K_DA36:DT4_L0.897-0.1890.212-4.13211.6751.959
175K_DC22:DG18_L0.039-0.122-0.5838.4063.444-2.034
180K_DC27:DG13_L0.58-0.1970.209-3.595-1.452-0.225
185K_DC32:DG8_L0.686-0.2290.2540.343-5.694-0.489
173K_DG20:DC20_L-1.341-0.428-0.410.52510.90.136
177K_DG24:DC16_L-0.408-0.165-0.2773.971-4.643-0.626
182K_DG29:DC11_L0.066-0.1020.4470.4452.3570.002
188K_DG35:DC5_L-0.559-0.2040.253-8.8543.884-0.333
176K_DT23:DA17_L0.004-0.132-0.4287.743-0.333-1.073
179K_DT26:DA14_L-0.576-0.133-0.027-1.842-5.3122.039
181K_DT28:DA12_L0.072-0.1960.466-1.2272.0322.586
183K_DT30:DA10_L-0.186-0.1680.4982.4680.3580.139
187K_DT34:DA6_L0.271-0.1880.395-7.251-2.0620.237
191M_DA21:DT19_N0.186-0.384-1.1164.88211.338-5.034
195M_DA25:DT15_N0.265-0.157-0.4220.853-5.5051.088
1101M_DA31:DT9_N-0.225-0.150.2334.463-3.0660.45
1103M_DA33:DT7_N0.114-0.1310.153-2.229-4.9860.921
1106M_DA36:DT4_N0.538-0.129-0.11-3.3848.6450.985
192M_DC22:DG18_N-0.047-0.278-1.1849.5536.2-4.097
197M_DC27:DG13_N0.422-0.1560.068-2.270.119-0.294
1102M_DC32:DG8_N0.497-0.1650.0541.428-5.839-0.459
190M_DG20:DC20_N-1.377-0.861-1.093-3.00213.091-3.774
194M_DG24:DC16_N-0.581-0.272-0.5644.194-3.217-0.72
199M_DG29:DC11_N-0.131-0.1130.3112.8882.8460.359
1105M_DG35:DC5_N-0.779-0.27-0.078-6.3152.074-1.201
193M_DT23:DA17_N-0.033-0.257-0.9218.6541.209-2.125
196M_DT26:DA14_N-0.732-0.153-0.202-0.818-4.2392.53
198M_DT28:DA12_N-0.058-0.1760.3240.8173.3032.255
1100M_DT30:DA10_N-0.399-0.180.3494.284-0.1331.157
1104M_DT34:DA6_N0.076-0.1770.114-4.342-2.80.091

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.