A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5N6I  PDB ID: 5N6I 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12GG_DA3DT4:DA36DT37_HH0.018-0.9543.456-0.353-1.19935.79-1.369-0.0833.485-1.9490.57435.811
16GG_DA7DC8:DG32DT33_HH0.1-1.043.455-1.3670.63937.003-1.727-0.3513.4321.0062.15337.033
19GG_DA10DG11:DC29DT30_HH0.551-0.6453.341-0.8350.78832.084-1.31-1.1493.3091.4261.5132.104
113GG_DA14DT15:DA25DT26_HH0.009-0.6513.4412.068-1.2834.348-0.890.3253.457-2.164-3.49634.431
117GG_DA18DT19:DA21DT22_HH0.128-0.8533.5320.51-0.64737.253-1.242-0.1283.547-1.012-0.79837.262
120GG_DA21DC22:DG18DT19_HH-0.183-0.3693.5670.5960.28638.122-0.6040.3623.5610.437-0.91238.127
124GG_DA25DT26:DA14DT15_HH0.001-0.6573.322-1.625-2.55631.784-0.721-0.3043.359-4.6542.95931.924
130GG_DA31DC32:DG8DT9_HH0.727-0.7223.4780.87-0.1938.925-1.059-0.9783.496-0.285-1.30638.934
132GG_DA33DT34:DA6DT7_HH0.417-1.2473.4281.629-0.84836.591-1.862-0.4283.47-1.35-2.59336.636
135GG_DA36DT37:DA3DT4_HH0.595-1.3723.4290.21-1.05334.68-2.131-0.9643.471-1.766-0.35234.696
14GG_DC5DT6:DA34DG35_HH-0.406-0.9363.302-1.0280.78732.996-1.7820.5383.2911.3851.80833.021
17GG_DC8DT9:DA31DG32_HH-0.816-0.8793.528-0.1160.6332.824-1.6721.4233.5141.1150.20632.831
115GG_DC16DT17:DA23DG24_HH0.22-0.2063.5120.517-1.6138.112-0.097-0.2673.52-2.464-0.79138.148
121GG_DC22DT23:DA17DG18_HH-0.116-0.223.5750.925-0.99336.083-0.2010.333.575-1.603-1.49336.108
126GG_DC27DT28:DA12DG13_HH-0.2-0.2353.409-2.098-0.60630.543-0.321-0.0553.419-1.1493.97730.619
131GG_DC32DA33:DT7DG8_HH0.074-0.4753.4821.396-0.69134.311-0.690.1073.491-1.171-2.36634.346
11GG_DG2DA3:DT37DC38_HH0.1370.0573.557-0.735-0.59747.9580.121-0.2323.554-0.7340.90547.967
110GG_DG11DT12:DA28DC29_HH-0.127-0.6283.3861.3161.50829.252-1.5750.5443.3412.982-2.60229.319
112GG_DG13DA14:DT26DC27_HH0.351-0.4643.3111.1872.71332.306-1.312-0.4193.2724.864-2.12732.437
119GG_DG20DA21:DT19DC20_HH0.127-0.1373.527-0.9750.17545.293-0.195-0.2593.5230.2271.26645.303
123GG_DG24DA25:DT15DC16_HH-0.114-0.2563.431-0.842-3.17643.396-0.0230.0683.442-4.2881.13743.514
128GG_DG29DT30:DA10DC11_HH-0.699-0.4613.4450.8141.9735.81-1.0441.2573.43.2-1.32235.871
134GG_DG35DA36:DT4DC5_HH0.23-0.73.3990.786-1.02846.11-0.802-0.2243.416-1.312-1.00346.127
13GG_DT4DC5:DG35DA36_HH-0.341-0.2313.401-1.168-0.8444.431-0.2240.3383.412-1.111.54544.453
15GG_DT6DA7:DT33DA34_HH-0.393-0.6153.255-0.8691.04837.63-1.0880.4973.2451.6241.34737.654
18GG_DT9DA10:DT30DA31_HH-0.1390.0073.433-0.2380.92441.539-0.0930.173.4331.3020.33541.549
111GG_DT12DG13:DC27DA28_HH0.437-0.2123.1721.8931.90432.66-0.694-0.4573.1753.378-3.3632.767
114GG_DT15DC16:DG24DA25_HH0.349-0.3133.4662.222-1.30339.233-0.3-0.2383.488-1.939-3.30639.314
116GG_DT17DA18:DT22DA23_HH-0.3070.2693.368-0.168-1.24440.3650.5330.4253.36-1.8030.24340.383
118GG_DT19DG20:DC20DA21_HH0.1510.1183.485-0.626-0.71340.7020.253-0.293.48-1.0250.940.713
122GG_DT23DG24:DC16DA17_HH0.0820.133.5661.639-2.61337.1930.580.1083.549-4.089-2.56437.316
125GG_DT26DC27:DG13DA14_HH-0.122-0.2363.446-1.47-1.71341.199-0.140.0073.455-2.4332.08741.258
127GG_DT28DG29:DC11DA12_HH0.108-0.3393.288-1.7171.8128.269-1.108-0.6153.2493.6973.50728.377
129GG_DT30DA31:DT9DA10_HH0.203-0.2273.2321.9290.63836.947-0.442-0.0643.2341.005-3.04237.001
133GG_DT34DG35:DC5DA6_HH0.582-0.6083.3081.913-0.50433.838-0.96-0.6863.344-0.865-3.28433.894
137II_DA3DT4:DA36DT37_JJ-0.025-0.9633.4650.238-0.79535.014-1.4730.083.485-1.321-0.39535.023
141II_DA7DC8:DG32DT33_JJ0.041-1.0233.464-1.4690.99137.538-1.724-0.2653.4321.5382.28137.578
144II_DA10DG11:DC29DT30_JJ0.313-0.6493.3810.0650.86229.882-1.443-0.5933.3621.672-0.12729.894
148II_DA14DT15:DA25DT26_JJ0.017-0.6663.4862.106-2.35234.459-0.7310.3193.517-3.959-3.54534.599
152II_DA18DT19:DA21DT22_JJ0.145-0.8933.5630.8090.42137.684-1.441-0.1113.5550.651-1.25237.695
155II_DA21DC22:DG18DT19_JJ-0.202-0.3893.6250.344-0.13939.19-0.5620.3473.624-0.208-0.51339.192
159II_DA25DT26:DA14DT15_JJ0.025-0.7123.357-1.949-1.99231.133-0.933-0.4283.388-3.7033.62231.254
165II_DA31DC32:DG8DT9_JJ0.715-0.7233.4740.8560.49739.003-1.146-0.9613.4790.744-1.28239.015
167II_DA33DT34:DA6DT7_JJ0.422-1.2523.4392.31-0.42436.58-1.929-0.3363.472-0.675-3.67636.652
170II_DA36DT37:DA3DT4_JJ0.299-1.2223.531-0.303-0.28933.549-2.065-0.5723.539-0.5010.52633.551
139II_DC5DT6:DA34DG35_JJ-0.376-0.9493.356-1.525-0.11733.591-1.6220.3943.372-0.2012.63733.625
142II_DC8DT9:DA31DG32_JJ-0.752-0.8213.582-0.0340.63534.991-1.471.2443.5681.0570.05634.996
150II_DC16DT17:DA23DG24_JJ0.218-0.1583.578-0.475-1.58739.003-0.028-0.3883.579-2.3750.71139.036
156II_DC22DT23:DA17DG18_JJ-0.112-0.2323.645-0.283-1.21436.253-0.1820.1353.651-1.950.45436.274
161II_DC27DT28:DA12DG13_JJ-0.285-0.2353.435-1.6891.26229.803-0.7310.1843.4332.4493.27829.875
166II_DC32DA33:DT7DG8_JJ0.051-0.5173.5212.0911.69233.894-1.1750.2713.4892.896-3.57933.998
136II_DG2DA3:DT37DC38_JJ-0.064-0.2133.570.564-0.25246.506-0.2460.1333.57-0.319-0.71446.51
145II_DG11DT12:DA28DC29_JJ-0.081-0.6513.4141.8771.09128.255-1.5910.6163.3752.23-3.83728.337
147II_DG13DA14:DT26DC27_JJ0.084-0.133.5933.297-3.84539.5240.2990.2973.584-5.657-4.85139.834
154II_DG20DA21:DT19DC20_JJ0.215-0.1483.6190.675-0.47945.802-0.144-0.2123.622-0.616-0.86845.809
158II_DG24DA25:DT15DC16_JJ-0.091-0.2523.456-0.967-2.02542.854-0.1310.0223.465-2.771.32242.91
163II_DG29DT30:DA10DC11_JJ-0.672-0.4753.4580.8610.45236.83-0.8161.1863.4360.715-1.36236.843
169II_DG35DA36:DT4DC5_JJ0.238-0.7283.3580.428-2.67445.838-0.694-0.2673.395-3.429-0.54945.913
138II_DT4DC5:DG35DA36_JJ-0.343-0.2573.412-0.697-1.243.521-0.2250.3923.422-1.6190.9443.542
140II_DT6DA7:DT33DA34_JJ-0.359-0.5543.382-2.5880.76839.129-0.920.2153.3871.1443.85839.218
143II_DT9DA10:DT30DA31_JJ0.437-0.0283.326-0.664-0.31238.032-0.002-0.7563.319-0.4791.01938.038
146II_DT12DG13:DC27DA28_JJ0.45-0.1543.2593.113-1.10333.083-0.084-0.2653.289-1.931-5.4533.243
149II_DT15DC16:DG24DA25_JJ0.316-0.2873.5460.89-2.54739.695-0.101-0.3523.563-3.745-1.30939.782
151II_DT17DA18:DT22DA23_JJ0.0260.1453.5530.865-0.72437.4190.3280.0833.549-1.128-1.34837.436
153II_DT19DG20:DC20DA21_JJ0.2360.1013.7110.14-1.06538.4880.302-0.3393.708-1.615-0.21338.502
157II_DT23DG24:DC16DA17_JJ0.0030.0913.631-0.187-1.65736.5910.397-0.0333.623-2.6370.29736.628
160II_DT26DC27:DG13DA14_JJ-0.204-0.2753.482-2.443-0.12239.551-0.391-0.0033.488-0.183.60639.624
162II_DT28DG29:DC11DA12_JJ0.139-0.3293.3410.6011.75528.558-1.07-0.1433.3183.554-1.21728.617
164II_DT30DA31:DT9DA10_JJ0.23-0.23.245-0.171-0.09437.133-0.301-0.3843.244-0.1480.26937.134
168II_DT34DG35:DC5DA6_JJ0.555-0.6583.3364.371-1.65633.854-0.848-0.2283.406-2.827-7.46234.166
172KK_DA21DC22:DG18DT19_LL-0.133-0.3483.5840.758-0.48239.071-0.4570.2983.584-0.721-1.13339.081
176KK_DA25DT26:DA14DT15_LL0.023-0.73.346-2.283-2.04331.272-0.898-0.4843.374-3.7784.22331.418
182KK_DA31DC32:DG8DT9_LL0.713-0.7393.4760.6730.01338.526-1.122-0.9923.4870.019-1.0238.532
184KK_DA33DT34:DA6DT7_LL0.412-1.2433.4331.325-0.51536.642-1.902-0.4643.462-0.819-2.10736.669
173KK_DC22DT23:DA17DG18_LL-0.059-0.2123.6020.22-2.52636.4650.0460.1283.608-4.031-0.35136.55
178KK_DC27DT28:DA12DG13_LL-0.277-0.2263.421-1.6661.31629.906-0.7210.1753.4192.5463.22329.979
183KK_DC32DA33:DT7DG8_LL0.062-0.5113.5040.6880.00334.408-0.8640.0093.5040.004-1.16334.415
171KK_DG20DA21:DT19DC20_LL-0.207-0.0863.487-0.1610.72647.531-0.1690.2433.4860.9010.247.537
175KK_DG24DA25:DT15DC16_LL-0.082-0.2553.429-1.548-2.80643.133-0.058-0.0483.439-3.8112.10243.246
180KK_DG29DT30:DA10DC11_LL-0.672-0.4643.4540.8531.05437.369-0.8691.1673.4251.644-1.3337.393
186KK_DG35DA36:DT4DC5_LL0.227-0.7693.4430.425-0.17947.155-0.946-0.2473.447-0.224-0.53247.158
174KK_DT23DG24:DC16DA17_LL0.0770.1093.562-0.076-3.89137.0160.732-0.1323.532-6.1080.11937.213
177KK_DT26DC27:DG13DA14_LL-0.196-0.2663.48-2.584-0.12439.984-0.373-0.0293.487-0.1813.77440.064
179KK_DT28DG29:DC11DA12_LL0.133-0.3553.3240.4392.12828.408-1.214-0.1693.2914.327-0.89328.489
181KK_DT30DA31:DT9DA10_LL0.202-0.1943.2390.378-0.03237.125-0.3-0.2683.241-0.05-0.59437.127
185KK_DT34DG35:DC5DA6_LL0.567-0.6113.3481.9120.42233.567-1.127-0.663.3670.731-3.30833.622
188MM_DA21DC22:DG18DT19_NN-0.1-0.3523.6150.44-0.88839.45-0.4060.2063.62-1.316-0.65239.462
192MM_DA25DT26:DA14DT15_NN0.023-0.7113.366-2.969-1.17131.218-1.088-0.623.374-2.175.49931.376
198MM_DA31DC32:DG8DT9_NN0.721-0.7383.4750.724-0.12738.379-1.106-1.0013.49-0.194-1.10138.385
1100MM_DA33DT34:DA6DT7_NN0.435-1.2453.4221.335-0.736.638-1.878-0.53.458-1.114-2.12236.668
189MM_DC22DT23:DA17DG18_NN-0.022-0.2013.656-0.57-3.03637.2330.134-0.0493.66-4.7460.89137.357
194MM_DC27DT28:DA12DG13_NN-0.282-0.2533.428-1.5541.63929.523-0.8590.2073.4193.213.04529.607
199MM_DC32DA33:DT7DG8_NN0.049-0.5073.4780.503-0.52934.096-0.7740.0023.486-0.903-0.85834.103
187MM_DG20DA21:DT19DC20_NN-0.172-0.0993.459-0.3870.45147.368-0.1620.1813.4590.5620.48147.371
191MM_DG24DA25:DT15DC16_NN-0.095-0.2723.409-2.161-2.21842.659-0.141-0.0953.419-3.0452.96642.766
196MM_DG29DT30:DA10DC11_NN-0.655-0.4713.4660.6921.20737.566-0.8961.1113.4371.874-1.07437.591
1102MM_DG35DA36:DT4DC5_NN0.229-0.7653.4550.258-0.40947.371-0.917-0.2633.462-0.509-0.32147.373
190MM_DT23DG24:DC16DA17_NN0.0660.0833.604-1.984-4.27836.8670.758-0.3953.564-6.733.12237.157
193MM_DT26DC27:DG13DA14_NN-0.201-0.2713.493-2.7510.9839.197-0.528-0.0513.4911.4594.09439.301
195MM_DT28DG29:DC11DA12_NN0.143-0.393.320.1912.40527.718-1.393-0.2513.2765.007-0.39827.821
197MM_DT30DA31:DT9DA10_NN0.179-0.183.260.432-0.17237.577-0.256-0.2223.263-0.267-0.67137.58
1101MM_DT34DG35:DC5DA6_NN0.549-0.5993.3322.218-0.31534.298-0.963-0.5743.365-0.534-3.75634.369

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.